Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq1190 122 7e-23 seq964 116 3e-21 seq1304 107 1e-18 >seq1190 Length=275307 Score = 122 bits (134), Expect = 7e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | || ||||| || | |||| || ||||| | ||||||||| || Sbjct 186899 CCACCACGAAGGCGCAATACCAAGTGCAAAGTGGATTCTTTTTGAATATTGTAATCAGAG 186840 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| | || ||||||||||| || || |||||||| || |||||||| | || Sbjct 186839 AGAGTACGGCCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGTTGTTGATCTGGTGGA 186780 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||||| || ||| ||| ||||||| | ||| |||||| | |||||| Sbjct 186779 ATTCCTTCTTTGTC-CTGAATCTTGGCTTTGACATTTTCAATAGTGTCGGACGGCTCGAC 186721 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || || || || ||||| ||||| |||||||| |||||| Sbjct 186720 CTCAAGAGTGATGGTCTTACCCGTTAGGGTTTTGACAAAAATCTGCATT 186672 >seq964 Length=291957 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 42881 CGCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGG 42940 |||||||||| || | || ||||||||||| ||| ||||||||| | ||||| || | Sbjct 217111 CGCCTCCACGAAGACGTAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAG 217052 Query 42941 ACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCG 43000 |||| ||||| | || |||| |||||| ||||| || ||||| || || ||||| | | Sbjct 217051 ACAAGGTACGACCATCTTCCAGTTGTTTACCGGCGAAGATCAAACGTTGCTGATCTGGGG 216992 Query 43001 GCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | | |||||| || || ||| | || || | ||| || ||| || |||| Sbjct 216991 GAATACCTTCCTTATCCTGGATTTTAGCCTTTACGTTCTCAATGGTATCGGAAGGTTCGA 216932 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || || ||||| ||||| | ||||| || || |||||||| Sbjct 216931 CTTCCAAAGTGATGGTTTTGCCGGTCAAGGTTTTAACGAAGATTTGCAT 216883 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||||| | ||| |||||||| | || || ||||| | ||| ||||| || Sbjct 215639 GCCACCACGCAAACGTAATACCAAATGCAATGTAGATTCTTTTTGTATATTATAATCAGA 215580 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 |||||| || |||| |||||||||||||| ||||||||||| || |||||||| | || Sbjct 215579 CAATGTGCGCCCGTCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGG 215520 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||||| || || |||| || | ||| || || || ||| || Sbjct 215519 GATTCCTTCTTTGTCTTGAATTTTAGCTTTAACATTTTCAATAGTATCAGAAGGCTCAAC 215460 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||| || || | || || ||||| |||||||| Sbjct 215459 TTCCAAAGTGATGGTTTTGCCAGTCAATGTCTTAACAAAGATTTGCAT 215412 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | || || ||||||| ||| ||||| || | |||||||| || Sbjct 216881 CCACCACGGAGACGCAATACTAAATGGAGAGTAGATTCCTTCTGGATGTTGTAATCCGAA 216822 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || ||| | || ||||||||||| |||||||| ||||| || ||||| || | || Sbjct 216821 AGGGTGCGTCCATCTTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGGTCTGGGGGA 216762 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || |||| | ||||| | ||| || ||| || || || Sbjct 216761 ATACCTTCCTTATCTTGGATCTTAGCCTTGACGTTTTCAATGGTATCGGAAGGTTCAACT 216702 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||||||||| | ||||||||| || || ||||| Sbjct 216701 TCCAAAGTGATGGTTTTTCCGGTCAAAGTTTTCACGAAGATCTGCAT 216655 Score = 105 bits (116), Expect = 5e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||||| | || ||||| |||| ||| || ||||| | ||| |||||||| Sbjct 215411 GCCACCACGCAAACGTAGAACCAAGTGGAGAGTAGATTCTTTTTGAATATTATAATCGGA 215352 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 ||| || ||| |||| ||||||||||| ||||||||||| | || |||||||| | || Sbjct 215351 CAAAGTGCGTCCGTCTTCCAATTGTTTACCGGCAAAAATTAGACGTTGTTGATCTGGGGG 215292 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||| || || || || | || || | ||| || || || ||||| Sbjct 215291 AATACCCTCCTTATCTTGAATTTTAGCCTTAACATTTTCAATCGTATCCGAAGGTTCGAC 215232 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || || || || || |||| ||| ||||| || ||||||||||| Sbjct 215231 CTCAAGGGTGATGGTCTTGCCAGTTAAAGTCTTCACGAAGATTTGCATTTT 215181 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||||| | || ||||| || | || || ||||| | || |||||||| Sbjct 215866 CCACCACGCAAACGCAATACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAATCGGAT 215807 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || || | || ||||| ||||| || || |||||||| ||||||||||| | || Sbjct 215806 AAAGTGCGGCCATCTTCCAACTGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGGGGA 215747 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||||||| || ||| |||| || | | | || || || || || Sbjct 215746 ATACCTTCTTTGTCTTGGATTTTAGCTTTAACATTTTCTATAGTATCCGAAGGTTCAACC 215687 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||| || |||| ||||| || ||||||||||| Sbjct 215686 TCCAATGTAATTGTTTTACCCGTTAATGTTTTAACGAAAATTTGCAT 215640 >seq1304 Length=336898 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | |||||||| | |||| |||||||| | ||||| |||||| Sbjct 274173 CCACCACGAAGACGGAGTACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCGGAC 274232 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || || | || ||||||||||| || || || ||||| || |||||||| | || Sbjct 274233 AAGGTGCGACCATCTTCCAATTGTTTACCAGCGAAGATCAAACGTTGTTGATCTGGGGGG 274292 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||||||| || ||| | ||||| | ||| |||||| || ||| || Sbjct 274293 ATACCTTCTTTGTCTTGGATTTTGGCCTTGACATTTTCAATGGTGTCGGAAGGCTCAACT 274352 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || || |||| |||||| || || || ||||| Sbjct 274353 TCCAAGGTAATGGTCTTACCAGTTAAAGTTTTGACGAAGATCTGCAT 274399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381361638075354