Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1348 574 6e-159 seq869 284 2e-71 seq583 122 1e-22 seq1394 100 4e-16 >seq1348 Length=1847788 Score = 574 bits (636), Expect = 6e-159 Identities = 1489/2261 (66%), Gaps = 18/2261 (1%) Strand=Plus/Plus Query 70801 GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGA 70860 ||||| ||||| | | || || | ||| || | | ||| |||||||| || |||| Sbjct 1698168 GTAAATTGAATAGCATTGGCGGCTGGTTTTGTTCTCAAATAATACATGCCGGTCTTTAAG 1698227 Query 70861 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATG 70920 || |||| | || ||||| || || | |||| || | || ||||| | Sbjct 1698228 CCTGATTTCCAGGCATAGAAATGTATGGAGGTCAATTTGCCGTAATTTGGCTCGGCCACA 1698287 Query 70921 TGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 70980 || ||||| | ||| ||||||||||| ||||| || || | ||| |||||||||| |||| Sbjct 1698288 TGTATATTGAACGATTGACTTTGATCTATGAAAGCGCCACGGTCGGCAGCCATTTGTATG 1698347 Query 70981 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAAG 71039 | ||||| | ||| ||||||| ||||| || | || | || ||| || || | Sbjct 1698348 GTGGTCTTAACGGAAATCTCCCAAACTGTTTTGTATAGATCACGTA-TATGTTTGGGTAT 1698406 Query 71040 GT-TTGTATTC--TGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATT 71096 | || ||| || ||||| || | || | |||||| ||||||| || || |||| Sbjct 1698407 TTCTTCTATGGCTTGTATGGAGCCGCGATTGGAAATAATTTTATTTTTCATTTCATCATC 1698466 Query 71097 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCC 71156 |||||| | ||||||||| || |||| | |||| |||| || || | |||||||| Sbjct 1698467 CCATAAATCAAGTTCGGTTAAATCTTTAAGCAAATGATGATTGACAACATTGAATTCTCC 1698526 Query 71157 AGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCC 71216 ||||| || | | ||||||||||||| ||| |||||||| | || ||||| || || Sbjct 1698527 CGACAAAACACGTCTAGTGTAAATATTAGAGGTGTACGGTTCAAAGGATTCATTGTTGCC 1698586 Query 71217 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACC 71276 | |||||| || || || || || ||||| || || | | | | ||| | | ||| Sbjct 1698587 TAGAATTTGTGCGGTCGAAGCTGTGGGCATTGGGGCTAATAGCAAAGAATTGCGTACACC 1698646 Query 71277 ATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGGTACAACNNN 71336 |||| | |||||| || || | | ||| ||||| | || | ||| Sbjct 1698647 ATGTTGACTGATTTTCTCCTTCAACTCTGACCAGTTCCACAAGTCTGTGGGTGTTTTATT 1698706 Query 71337 NNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATGG 71396 || || ||||| | | || | ||| || || |||| Sbjct 1698707 CCACATATCATATTGTAGTATACCCTTACTTACTGGACAGCCGGGATAAGTTTCATATGT 1698766 Query 71397 TCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAA 71456 || ||||||||||| | ||||||||| || || || || ||||||||||| |||||||| Sbjct 1698767 GCCATCTTTTTCGGCCAATTCACAACTAGCTTCCAAAGCGCCATAATAAATAGTTTCGAA 1698826 Query 71457 AATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAA 71516 ||||| | ||| | ||| | || ||| | || ||| | | ||| || Sbjct 1698827 AATCTGTTGATTTAACAAAAATGCCTTTTCACTCTCATAGGGGTAACGCATTAAAATCAA 1698886 Query 71517 CGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTC 71576 | || || || || ||||| || ||||| ||||| | || | | ||| || || Sbjct 1698887 AGTATCGGCAAAACCCTGAACACCTATACCAATAGGACGATGACGCAAATTGGACTTTCT 1698946 Query 71577 AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTAC 71636 |||||| || | |||||| | || || || || ||||| |||||||| || || || Sbjct 1698947 AGCTTCGGGCAACGGATAAAAGTTGATGTCGATGATTTTGTTGAGATTCTTGGTAATAAC 1699006 Query 71637 TTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATCT---ATTACAAACACGTT 71693 ||| |||| || | ||| |||||||| || ||| | ||||||| || Sbjct 1699007 TTTTGTAACATTTTTCAATTTTTTGAAATCAAAGGTCTTTTCTGGCGTGACAAACATATT 1699066 Query 71694 CAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAAT 71753 | ||||| || |||| ||||||||| |||| ||||| || | | ||||| || ||| Sbjct 1699067 AAGGGCAATGGAGGCCAAATTACAAACAGCTATCTCATCAGGGGCAGAATATTCTACAAT 1699126 Query 71754 TTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 71813 || ||||| | || || ||||| ||||| || | ||||| || || || || ||| Sbjct 1699127 CTCTGTGCATAAGTTGCTGCACTTAATGGTGCCAATGTTTTGCTGGTTGCTTTTGCGGTT 1699186 Query 71814 ACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 71873 || ||||| || || | ||| | || ||||| ||||||| |||| ||| || || || Sbjct 1699187 GCAAGCATCTTTGTACAACATATAGGGTGTACCGGTTTCAACTTGAGCTTCAATTATAGC 1699246 Query 71874 TTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGT 71933 ||| | | |||| || | | ||| | | |||| |||| || | || Sbjct 1699247 AAACCAAAGAGCCTGAGCTTTGACGGTGCGATTGGCTTTTCCTTCTTTTTCATACTTGGT 1699306 Query 71934 ATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACA 71993 ||| ||| ||||||||| || |||||| ||| | | || ||||||| | ||||| Sbjct 1699307 ATACAATTCTTCGAACTCCTCACCCCAAACATCCTGCAGACCGGGACATTTGTGTGGACA 1699366 Query 71994 CATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAG 72053 ||| | ||||| || |||| || | || ||||||||||| | || || ||||| || Sbjct 1699367 CATTAGGGACCAGTCACCATTTTCTTCCACACGTTTCATAAACAAGTCGGGTATCCACAG 1699426 Query 72054 AGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 72112 ||| ||| || |||||||||| ||||||||| || || || ||||| || || | ||| | Sbjct 1699427 AGC-ATAGAAAAGATCTCTGGCTCTATGCTCTTCCTTGCCGGTATTTTTCTTTAAATCCA 1699485 Query 72113 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTT 72172 || | | |||||| |||||||| || ||||| || || || | | || || |||| Sbjct 1699486 AAAATTCAAAAATATCTGAATGCCAAGGCTCCAAATAAATAGCAAAGGCACCAGGGCGTT 1699545 Query 72173 TGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAA 72232 || || |||||||| | || | || || ||| | || || | |||||| | | Sbjct 1699546 TGCCACCACCCTGATCAACATAGCGGGCTACATTGTTAAACACCCTGAGCATTGGTACCA 1699605 Query 72233 TACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGCT 72290 |||||| || | || || || ||| || | | || |||| | || | || | Sbjct 1699606 GACCATTTGAGGTGCCGTTTGTGCCGTCAATGGAAGTGCCCTTGGCCCTTATGCAGTG-T 1699664 Query 72291 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 72350 | | || || || || || ||| ||| || || | || ||| ||| | | | Sbjct 1699665 ACGT-TTATGCCAATACCACCCGCCGATTTGGATATCATGGCACATTGTTCCACTGACTT 1699723 Query 72351 ATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 72410 | || ||||| ||| ||| ||| |||| | | || ||||| |||| || | Sbjct 1699724 GAAAATACCCTCAATAGAATCGGCCACCATGGTCAATAAGAAACACGACGACAACTGCGG 1699783 Query 72411 ACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAG 72470 | | | || | || || || ||||| || || || ||||| | ||||||| Sbjct 1699784 TCTATTGGTAGCAGCCGCGAACAATGTAGGCGACGCATGGGTAAAATAACGCTCAGACAA 1699843 Query 72471 TAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACG 72530 | ||| || || |||||||| || || ||||| | |||||| |||| || || | Sbjct 1699844 CAAATTATAAGTTTCAATAGCCGAATCAATATCGTCTCCATGTATACCTATAGCTACTCT 1699903 Query 72531 CATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTT 72590 ||||||||||||||| ||||| ||||| ||||| ||| ||||| | ||| || ||| | Sbjct 1699904 CATTAACATATGCTGTGGTCTCTCAACAATCTTACCATTCATTTTTAGCAAATAAGATCT 1699963 Query 72591 TTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGA 72650 |||| ||||| || || || |||||||| |||||| || || |||||||| ||| Sbjct 1699964 CTCCAGTGTTTTGAAGCCGAAGTAGTTGTAGCCAAAGTCACGATCATAAATAATTGACGA 1700023 Query 72651 ATTGAGTTTATCCTTATATTTGTTAACTATAT--CCATGGTGATACTTGAAATAATCGGA 72708 ||| | || || ||| | |||| || ||||| || | ||||| | || Sbjct 1700024 ATTCAAACGTTCTGCATTTTTCTGCACTACATTGTAATGGT-ATTC-GGAAATCAATGGC 1700081 Query 72709 GAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAAT 72768 || || ||| | | ||||||| | | | | ||| || || || ||| Sbjct 1700082 GATGGTCGCCCCGTCTCTTTATTAACAAAATGATACAGATCACTTATAACCTCTGAGAAT 1700141 Query 72769 AGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAA 72828 | |||||| ||||| ||||| | ||| || || || || | || || | ||||||||| Sbjct 1700142 ACTTTTTTCGTTTCTTTGTGCAAATTGGAGACAGCAATGCGAGCTGCCAATATGGCATAA 1700201 Query 72829 TCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACC 72888 ||| ||| | |||||| | || ||||| | ||||| |||| | |||||| |||| Sbjct 1700202 TCTCCATGATTTGTAGTTAATGTAGCTGCGGTCTCTGCCGCCAAATTGTCCAGTTCTTGT 1700261 Query 72889 GTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATA 72948 || || || ||| || | || | || ||||||| | || | ||||| | | Sbjct 1700262 GTAGTAACACCACAGTAAAGGCCATTAATTACCTTCAGTGTAATGGCCACTGGATCAACA 1700321 Query 72949 TGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGACGTGATTTTATCAAACATA 73008 ||| |||| ||||||||||||| ||| || || || || |||||||| || Sbjct 1700322 AAATCCATGTTCAAGCCATAACATAGCTTTTGTATGCGTGATGTTATTTTATCGAAATGT 1700381 Query 73009 ACATTTTCCCGGCATCCATTTCGTTTAACGACAAACATTTT 73049 || | |||| || ||||| |||||||| ||||| | ||| Sbjct 1700382 ACCTCTTCCTTGCGTCCATCTCGTTTAAGAACAAATAATTT 1700422 >seq869 Length=1271022 Score = 284 bits (314), Expect = 2e-71 Identities = 504/726 (69%), Gaps = 13/726 (2%) Strand=Plus/Minus Query 41880 CCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAAT 41939 ||||||| | ||| | ||| || | |||||||||||| ||| | || ||||| Sbjct 484158 CCAATTCCACCAGCAAACGATCGGCCACAAATTCTATATATTCCGACATTAATTTACAAT 484099 Query 41940 TCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCG 41999 |||| ||||| | || || || | ||| | ||||| ||||| |||||||| |||| Sbjct 484098 TCATGCCTATCAAATTGACGGGCAAAGCATCTGTAAGGAATTCCTGTTCAATTTTCACCG 484039 Query 42000 CGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACA 42059 | || || ||||| | | | | ||| ||| || | | | ||||||||||||| Sbjct 484038 CTTCAGTGATAATTTCAATAATTCTCTCTCGACTGGGACGTTGTACCAAATGTTTAAACA 483979 Query 42060 TCAA-ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAAC 42118 | || ||| || ||||| || || | ||||||||| | || || || ||||| || Sbjct 483978 TTAATACA-GCAAAATCACAATGTAAACCCTCATCACGTGATATCAACTCATTGGAGAAT 483920 Query 42119 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAA 42178 || || || ||||| || ||||| || || |||||||| || || ||||| ||| | Sbjct 483919 GTAAGACCAGGCATAAGACCACGTTTCTTTAGCCAAAAGATGGAAGCAAAACTGCCACTA 483860 Query 42179 AAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCAC-TGTC 42237 ||||| || || ||||| || ||||| ||||||| | || ||| || || | || Sbjct 483859 AAGAAAATACCCTCTACAGCAGCAAAAGCAATAATACGTTCACCAAAATTTGCTGATTTC 483800 Query 42238 --ATGTATCCA--CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 42293 | ||||| | ||| ||||||||||||| || ||| ||||| ||||| | Sbjct 483799 GAAGAAATCCAAGCCATTG--CCCAATCGGCCTTACGCTTAACAGCTGGCATAGTTTCAA 483742 Query 42294 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGAC 42353 | |||||||||||||| | | | || ||| |||| ||| |||| || | || || Sbjct 483741 TAGCATTAAAGAGATAATCACGCTGTTCACGATCCTTAATATAACTATCAATTAGAATAC 483682 Query 42354 TATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCT 42413 |||||||||| || || | ||||| ||||| || ||||| || |||||||| | |||| Sbjct 483681 TATACATTTCAGAGTGTACATTTTCCATGGCAATTTGAAAGCCATAGAAACAGCGTGCCT 483622 Query 42414 CGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCAC 42473 | ||||| ||||||||| | | || ||||| | | |||||| || || || || || Sbjct 483621 CTGTAACTTGTACTTCTTGAGAGAAACGTTCGACAAGATTTTCATTGACAATGCCATCGG 483562 Query 42474 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT--CCGGTGTTAATTT 42531 || || || || || | |||||| || |||| || | ||||| | | | Sbjct 483561 AAGCGGCGAAGAAAGCAAGAACATGTGAAATGAAATGACGCTCATTGTCGGTG--AGTCT 483504 Query 42532 ATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTC 42591 | ||| || | |||||||||| | |||||||||||||||||||||||| || ||||| Sbjct 483503 TTCCCAGTCGGAGTTATCTTTAGAAAGATCTACTTCTTCTACCGTCCAAAAAGAAGCTTC 483444 Query 42592 TGCCTT 42597 ||||| Sbjct 483443 GGCCTT 483438 >seq583 Length=2816 Score = 122 bits (134), Expect = 1e-22 Identities = 314/473 (66%), Gaps = 4/473 (1%) Strand=Plus/Minus Query 41749 GTCTTCTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATT 41808 ||| | || || |||||| || || ||||| |||| ||||| || || || || || Sbjct 641 GTCCTGTTTAGCCATAACACCGGCCTTCTGGTAGTCACTAACACGCTTCTCAAAGAAGTT 582 Query 41809 AGTCTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAt 41868 |||||| || |||| || ||||| ||||||||||| || ||||||| ||| || ||||| Sbjct 581 AGTCTTACCAGCCAAAGAGATATTCTCCATGAAATCGAAGGGATTGGCAACCTTGTAAAT 522 Query 41869 ttttttAAATCCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCAT 41928 || | | ||||| || || || | || || | | | || | || ||||| Sbjct 521 CTTCTCATGGCCCAAGGCAACCATTAAACGGTCAGCTACGTACTCAACGTACTGATTCAT 462 Query 41929 CATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACA-GTAAGAAATTCTTGTT 41987 || ||| |||||| || | | | ||| || | ||| || | ||| | ||||||| Sbjct 461 CAAATCAGCATTCATACCAAGCAAGTGAACAGGCAAAGCATCACGGAAG-TACTCTTGTT 403 Query 41988 CAATAGAGACCGCGTCTGTTATAATA-GATCTTACTGTTTCTTCACTCGGTGGATACAAT 42046 ||||| || || || || |||||| | || | | || ||| || | | | | Sbjct 402 CAATATCAACAGCCTCGGTCATAATACGCTC-AATAATCTCACGACTGGGACGGTTCTCT 344 Query 42047 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAAT 42106 || || || | | ||| |||||||| ||||| |||||||||||| ||| | Sbjct 343 AAGTGAGAGAAGAGAAGACAAGCGAAATCAGTGTGCATACCCTCATCTCTGGAAATAAGC 284 Query 42107 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA 42166 || || || || | || ||||| | ||||||||| || | ||| || || | || Sbjct 283 TCATTACTGAATGTTAAACCAGGCATCAAGCCACGCTTCTTCAACCAGAAAATGGCAGCG 224 Query 42167 AATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTC 42219 ||||| ||| ||||||| || || || || || || || | | |||||| Sbjct 223 AATGAACCACTGAAGAAGACACCCTCGACAGCAGCGAAAGCGACTAATCTCTC 171 >seq1394 Length=309634 Score = 100 bits (110), Expect = 4e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 36473 AATACCCAATTCCTTGACCTGAGTTAGTGATCTCCAATCCATGTTAGCGCTTCCTAAATA 36532 |||||| ||||| || ||||| |||| |||||||| ||||| || || || || ||||| Sbjct 287882 AATACCTAATTCTTTAACCTGCGTTAAAGATCTCCAGTCCATATTGGCACTGCCCAAATA 287941 Query 36533 AATATGTGTATTATCAGATATCCAAAATTTTGTATGAAGAACTCCTCC 36580 ||||||| | || ||||| ||||| ||||||||||| | ||| || || Sbjct 287942 AATATGTTTTTTGTCAGAAATCCAGAATTTTGTATGTAAAACACCACC 287989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671124829231880