Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq869 167 3e-36 seq1348 120 5e-22 seq1303 116 5e-21 >seq869 Length=1271022 Score = 167 bits (184), Expect = 3e-36 Identities = 489/741 (66%), Gaps = 48/741 (6%) Strand=Plus/Plus Query 125037 AAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGAT 125096 ||||| | || || ||||||||||| ||||| || ||||| || || || | ||| Sbjct 483438 AAGGCCGAAGCTTCTTTTTGGACGGTAGAAGAAGTAGATCTTTCTAAAGATAACTCCGAC 483497 Query 125097 TGGGA--GACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCT 125154 ||||| ||||| || || | |||||| | || || || || || | || |||| Sbjct 483498 TGGGAAAGACTC-----ACCGACAATGAGCGTCATTTCATTTCACATGTTCTTGCTTTCT 483552 Query 125155 TTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTG 125213 | |||| |||||||| || ||||| || ||||| || || ||| ||||||||||| | Sbjct 483553 TCGCCGCTTCCGATGGCATTGTCAATGAAAATCTTGTCGA-ACGTTTCTCTCAAGAAGT- 483610 Query 125214 ACCA-TTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTC 125272 || | || |||||| || || || || || ||||| || || || || ||||| Sbjct 483611 ACAAGTTACAGAGGCACGCTGTTTCTATGGCTTTCAAATTGCCATGGAAAATGTACACTC 483670 Query 125273 GGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAACGTAAACA-CATG- 125330 |||||||| || || ||||| | || ||| ||| ||| |||| | || Sbjct 483671 TGAAATGTATAGTATTCTAATTGATAGTTATATTAAGGAT------CGTGAACAGCGTGA 483724 Query 125331 ----CTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAA---AAAGGCTCAATGGGT 125383 |||||||| || || || || |||| || | ||| ||||| | |||| Sbjct 483725 TTATCTCTTTAATGCTATTGAAACTATGCCAGCTGT---TAAGCGTAAGGCCGATTGGGC 483781 Query 125384 GATTCGGTGGA-----TCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTC 125438 || |||| |||| | ||| | || || || | | | || || Sbjct 483782 AATGGCTTGGATTTCTTCGAAATCAGCAAATTTTGGT-----GAACGTATTATTGCTTTT 483836 Query 125439 GCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAG 125498 || || |||||||| || |||||| || |||||||| ||||||||||||| ||||| Sbjct 483837 GCTGCTGTAGAGGGTATTTTCTTTAGTGGCAGTTTTGCTTCCATCTTTTGGCTAAAGAAA 483896 Query 125499 CGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTA 125558 || || || ||||| || || || | || ||||| ||||| || || ||||| || Sbjct 483897 CGTGGTCTTATGCCTGGTCTTACATTCTCCAATGAGTTGATATCACGTGATGAGGGTTTA 483956 Query 125559 CACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGC 125618 || ||||| ||||| | || ||||| || || || || | || | || || Sbjct 483957 CATTGTGATTTTGCTGTATTAATGTTT---AAACATTTG-GTACAACGTCCCAGTCGAGA 484012 Query 125619 GATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACC 125678 || ||| | || | ||| | || || || |||| || ||||| || || || || Sbjct 484013 GA-GAA----TTATTGAAATTATCACTGAAGCGGTGAAAATTGAACAGGAATTCCTTACA 484067 Query 125679 GAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAG 125738 || | | || |||| |||| |||||||| || || |||||| || || ||||| Sbjct 484068 GATGCTTTGCCCGTCAATTTGATAGGCATGAATTGTAAATTAATGTCGGAATATATAGAA 484127 Query 125739 TTTGTGGCAGATCGTCTACTG 125759 |||||||| |||||| | ||| Sbjct 484128 TTTGTGGCCGATCGTTTGCTG 484148 >seq1348 Length=1847788 Score = 120 bits (132), Expect = 5e-22 Identities = 318/480 (66%), Gaps = 8/480 (2%) Strand=Plus/Minus Query 97785 AACTCTTTGCTGGTGGCACCGATGCCCACGGCTACCACTTCCCAAGTGTTTGGCAATGCT 97844 || |||||||| | || || |||||||| ||| | || | ||| | | ||||| | Sbjct 1698637 AATTCTTTGCTATTAGCCCCAATGCCCACAGCTTCGACCGCACAAATTCTAGGCAACAAT 1698578 Query 97845 GAATCTTTTGAACCGTTCACGTCAAACATGTACCAGAGACGCACCCAGTCTGGAGAGTTT 97904 ||||| |||||||||| ||| || || || ||| ||||| ||| ||||| || Sbjct 1698577 GAATCCTTTGAACCGTACACCTCTAATATTTACACTAGACGTGTTTTGTCGGGAGAATT- 1698519 Query 97905 CAAT--TGACCAACGTGCACTTGGTTCGAGACTTGGAACGG--CTCAATCTGTGGAACGA 97960 |||| || | | | | || ||| || ||| || ||| | || || | ||| | || Sbjct 1698518 CAATGTTGTCAATCAT-CATTTGCTTAAAGATTT--AACCGAACTTGATTTATGGGATGA 1698462 Query 97961 TGACATGGCCCAGTTGATCATGTACAACAATGGGTCCATTCAAAACATTACCATCATCCC 98020 ||| ||| | || || | ||| || ||||| ||| ||| || || Sbjct 1698461 TGAAATGAAAAATAAAATTATTTCCAATCGCGGCTCCATACAAGCCATAGAAGAAATACC 1698402 Query 98021 GGAAGAGTTGCGCAGAATCTACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGA 98080 || | | || | ||||| || || ||||||||| | ||||| || | Sbjct 1698401 CAAACATATACGTGATCTATACAAAACAGTTTGGGAGATTTCCGTTAAGACCACCATACA 1698342 Query 98081 TATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGC 98140 |||||||||||| | || | | ||| || || ||||||||||||||| | | || || Sbjct 1698341 AATGGCTGCCGACCGTGGCGCTTTCATAGATCAAAGTCAATCGTTCAATATACATGTGGC 1698282 Query 98141 CGAGCCCACCTACAGTCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAA 98200 |||||| | ||| | |||| || ||||| || || || ||||| ||| | || Sbjct 1698281 CGAGCCAAATTACGGCAAATTGACCTCCATACATTTCTATGCCTGGAAATCAGGCTTAAA 1698222 Query 98201 GACGGGCATGTACTATCTGAGAACAAAGTCGGCCACCAATGCCATACCATTTACGGTGGA 98260 ||| |||||||| ||| |||||||||| | ||| ||||||| || | |||||| || || Sbjct 1698221 GACCGGCATGTATTATTTGAGAACAAAACCAGCCGCCAATGCTATTCAATTTACCGTAGA 1698162 Score = 107 bits (118), Expect = 3e-18 Identities = 352/544 (65%), Gaps = 10/544 (2%) Strand=Plus/Minus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGT--CAC 96864 |||||||||| | | | ||| || || ||||||||||| ||| || |||||| | | Sbjct 1699627 ACAAACGGCACCTCAAATGGTCTGGTACCAATGCTCAGGGTGTTTAA--CAATGTAGCCC 1699570 Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924 | || ||| ||||| || ||||| || || || | || | || ||||| |||| Sbjct 1699569 GCTATGTTGATCAGGGTGGTGGCAAACGCCCTGGTGCCTTTGCTATTTATTTGGAGCCTT 1699510 Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984 |||| | || ||||||| ||| | || | ||||| | ||| |||||| Sbjct 1699509 GGCATTCAGATATTTTTGAATTTTTGGATTTAAAGAAAAATACCGGCAAGGAAGAGCATA 1699450 Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACG 97044 ||||||| || | || ||||| || ||| | || || ||||| ||||| || || | | Sbjct 1699449 GAGCCAGAGATCTTTTCTATGCTCTGTGGATACCCGACTTGTTTATGAAACGTGTGGAAG 1699390 Query 97045 ACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGG 97104 | ||| ||||| ||||||||| || || | ||||||||| ||| |||| Sbjct 1699389 AAAATGGTGACTGGTCCCTAATGTGTCCACACAAATGTCCCGGTCTGCAGGATGTTTGGG 1699330 Query 97105 GCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACG-- 97162 | || ||||| || | ||| || || || |||| | || | | | || Sbjct 1699329 GTGAGGAGTTCGAAGAATTGTATACCAAGTATGAAAAAGAAG---GAAAAGCCAATCGCA 1699273 Query 97163 -AGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTC 97221 ||| | || | | || ||| || || | ||||| || || || || || | Sbjct 1699272 CCGTCAAAGCTCAGGCTCTTTGGTTTGCTATAATTGAAGCTCAAGTTGAAACCGGTACAC 1699213 Query 97222 CGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCA 97281 | || || | ||||| ||| | || ||||| |||||||| | || | ||||||| Sbjct 1699212 CCTATATGTTGTACAAAGATGCTTGCAACCGCAAAAGCAACCAGCAAAACATTGGCACCA 1699153 Query 97282 TCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAG 97341 | ||| || ||| | ||||| || |||||||| || | | || || |||| || | Sbjct 1699152 TTAAGTGCAGCAACTTATGCACAGAGATTGTAGAATATTCTGCCCCTGATGAGATAGCTG 1699093 Query 97342 TTTG 97345 |||| Sbjct 1699092 TTTG 1699089 >seq1303 Length=344040 Score = 116 bits (128), Expect = 5e-21 Identities = 336/517 (65%), Gaps = 0/517 (0%) Strand=Plus/Minus Query 69999 TACACATTTGGAGCGGCAACAGTAGTCGAAGCGTTTTGGATTCGCTCGGCTTCACCGACA 70058 ||||||||||| || || ||| ||| | | |||||| | || || ||||| Sbjct 96329 TACACATTTGGGATGGTAATAGTGATCGTAAATTCTTGGATAAATTAGGTTTTACCGAAC 96270 Query 70059 GACAAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGT 70118 | ||||||| ||| |||| || ||||| || ||||| ||| | || | || |||| | Sbjct 96269 GCGAAGAGGGTGATTTGGGTCCTGTGTATGGTTTCCAATGGCGTCATTTTGGTGCCAAAT 96210 Query 70119 ATGTAGACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTG 70178 || ||| | || || || | ||||||| ||||| || || |||| Sbjct 96209 ATCGCACTTGCCACGATGATTACTCCAATGAGGGTGTGGATCAGCTGAAGGAGGTCATCA 96150 Query 70179 ACACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAG 70238 | || | || ||||| | ||| | | || | |||| | ||||||||| | Sbjct 96149 ATACAATACGTACTAATCCCAATGATCGACGTATTATTATGTCAGCCTGGAATCCTCTCG 96090 Query 70239 ATTTGCACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGTACGATG 70298 || | | |||||||| | || || ||||| |||||||| || || || | ||| Sbjct 96089 ATATACCACAAATGGCTTTGCCGCCCTGTCATTGTTTGGCACAATTCTATGTGGCAAATG 96030 Query 70299 GCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTA 70358 | || | |||||| |||| || | || || |||||||| || |||||||| |||| Sbjct 96029 GTGAACTATCATGCCAGTTGTACCAACGCAGCGCTGACATGGGTCTGGGTGTACCATTTA 95970 Query 70359 ACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGC 70418 | || || ||| || | | || | ||||||||||| |||||||| ||||| | Sbjct 95969 ATATAGCTTCATATGCTTTACTAACATATATGATTGCTCATATTACCGGTTTGAAACCAG 95910 Query 70419 ACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAA 70478 || || | || |||| ||| || |||| || ||| ||||| || || || || | Sbjct 95909 GAGATTTTATTCATACCACTGGTGATACTCATGTTTATAAGAATCATATTGAACCTTTGA 95850 Query 70479 AGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAA 70515 ||| ||| | |||| | || | ||||| || || Sbjct 95849 AGGAACAATTGAAACGTAAACCACGTCCTTTCCCTAA 95813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741043332069880