Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_004165.1 Length=18630 Score E Sequences producing significant alignments: (Bits) Value seq1089 214 2e-51 >seq1089 Length=16580 Score = 214 bits (236), Expect = 2e-51 Identities = 932/1439 (65%), Gaps = 58/1439 (4%) Strand=Plus/Plus Query 1287 CAACAATATCCTTTATTATTTCTGGTACTTCTGTACCTGTTAAATGTATACTATCAGTGT 1346 |||||||||| || ||| |||||| || ||| |||| ||| || || ||| |||| Sbjct 11462 CAACAATATCTTTGATTGATTCTGGAACGTCTAAACCTTCTAAGTGCATTGAATCGGTGT 11521 Query 1347 CACAATATATAATTCTATCGTAACACGCTTGTGCCGCTGTTATAGTTGTAAATCTAGCCC 1406 ||||||| ||||||| ||| || ||| ||| || ||| || || ||| ||||||||| Sbjct 11522 CACAATAAATAATTCGATCATAGCACTTTTGCGCACTTGTAATGGTGGTATATCTAGCCC 11581 Query 1407 ATGCCGTTATAAACACACCCATAGGTGTATAAACAGGGTCTTTATATTCCTCAT-CACCA 1465 ||| ||| || || | ||| | ||| ||||||||||| || | |||| || | || | Sbjct 11582 ATGACGTAATGAATATACCTACAGGAGTATAAACAGGATCACGAAATTCTTCTTCCATTA 11641 Query 1466 ACACGGAAACCAAGGCTCCCATCTTCTTTTAAATAAGGGACTTTACCTGTAACGTCAGGG 1525 | | ||||| ||| || || ||||||||| ||| ||||||| ||| || Sbjct 11642 ATTC-AAAACCGTTTGACCCGTCCTCACGTAAATAAGGACGTTTGCCTGTAATGTCTGGA 11700 Query 1526 TTACTTGCAAATTTACCATAGAGACTATCGAACATTAGCTTAGCCAATTGTTTCTTAGCT 1585 || |||||||||| ||||| | | || | ||||| || || | |||||| ||| Sbjct 11701 TTGGTTGCAAATTTTCCATACAAAGAATTAAGCATTAATTTTGCTATAGCTTTCTTTGCT 11760 Query 1586 CC-CTTTTCATGAGTTTTTACATATGTCCATTTATCAATAAACTCTTTGAATAATCCAGT 1644 || |||| |||| || | ||||||| ||||| | | | | ||| | | Sbjct 11761 CCTGCCGACATG-TTTTTAACTAACATCCATTTGTCAATGTATTGTCTAAATGCTTGTTT 11819 Query 1645 CTTTTCACGGAATTTAAATCCGTCAATATACTCAACGTTATACATTTCGTAGTGTTC-CT 1703 | | | || || | || | | |||| || | || | | |||||||| || Sbjct 11820 CGTGCTTCTAAACTTCCAACCTTTTTCAAACTCTACATCGTAGACATGATAGTGTTCTCT 11879 Query 1704 GTATTAATTCTAAATCTACA-TTAGTA-AGATATAGTTCAACAGGCTCAGCGCCACTGTT 1761 | |||| ||| |||| ||| || || || || ||| | | ||| || ||| Sbjct 11880 G-ATTAGTTCCCAATCAACACTTGATACGGAAATCGTT--ATCCGTTCACCGTTACTAGA 11936 Query 1762 TTTAAGATACTCATTACCCTTAAA----AAAGGGATTTTTCTTAATCTGAATTGTGGGTA 1817 || || ||||| || || || || || | ||| ||||| ||||| || || | Sbjct 11937 CGATAGGTATTCATTTCCTTTGAAACCGAATCGGCTGTTTTTTAAT-TGAATCGTAGGAA 11995 Query 1818 TATAGCCCTCTTTCAATTCAAACTCAAATCTGATACGCTGTATATAGAGCGGATATTGCT 1877 |||| |||||||||||||||||| ||| | | || ||||| | || | | | Sbjct 11996 TATAATTCTCTTTCAATTCAAACTCGAATGTTAGTTTTTGAATATATAAGGGGTGTGATT 12055 Query 1878 CATCTTTCTCATACTTTCCTTGGAATACGATTGGCGCTCCGTACGGGAGTGGTCGGGAAT 1937 || | |||| | |||| || || || | || | || | |||| || Sbjct 12056 TGTCATAAACATATTCACCTTCAAACGGAATAGGAACACCACAAGGCAAATCTCGGTCAT 12115 Query 1938 ACATCTGACTGGGGTATAGGCTGTTAACGTCAAACACCATACCTTCACCAATCT-CTTTT 1996 |||| || || || ||| ||||| ||||| || ||||| || | | ||||| Sbjct 12116 ACATTTGTGACGGATACAGGGAATTAACATCAAATACAATACCGTCTTTTACATACTTTT 12175 Query 1997 TCTTT--GTATTTATCGTTTAACCATGTGAAGCCACCACGATAAGCTCGCCTTATTTCTT 2054 || || ||| | ||| |||||||| || || |||||||| ||| || ||||||| Sbjct 12176 TCGTTCCATATACAGGGTTCAACCATGTAAAACCGCCACGATAGGCTTTTCTAATTTCTT 12235 Query 2055 TATCCATTGGTAGGCTAAGCTTAGGAAACACCTTGT--TAAATTTCTTGGTGCTAAGTAT 2112 || | | || || |||||||| ||| | |||| || | | | || Sbjct 12236 CATTTAATTCTAATGAAAAAACAGGAAACAACTTTTCGTAAAGTT-----TACCAGACAT 12290 Query 2113 GTCCTTAAACCCTTTAAGGCTATCGCTCCCAGCTGTCATTCGGTCTAAACCCTGTTTAAA 2172 | ||| | | ||| ||| | || |||||| | ||| || || | Sbjct 12291 ATTAACAAATTCATCAAGAGCATCCTTACCGTTTGTCATGCCTGTTAACCCTTGCACAGT 12350 Query 2173 TTGAATGTCAAGTGCACGTGCGATAATTTCTATGTCGTTCTTAATATACTCGTATTCTTC 2232 ||||| || | ||| ||| ||||||| || ||||| ||||| || | |||||||| Sbjct 12351 TTGAACTTCTAATGCTTCTGCTATAATTTGAATATCGTTTTTAATGTATTGATATTCTTC 12410 Query 2233 GGGTGTTATCTCATGTCCAACAGG---ACGTTCAGCGTGGTAATCAATGTCACCCTTCAA 2289 ||||||| |||| || | ||| | || ||||| || || || ||||| Sbjct 12411 ATCGTCAATCTCATAACCAATTGGTCTAGGTTTA---TGATAATCGATATCGCCTTTCAA 12467 Query 2290 TAACGGT-AATTGAAAATCTTTCGCTATTTTCTTTACTGGGAACGGCAATTTCTTTAAGC 2348 |||| | |||| |||||||| ||||||| || ||||| || | ||||||||| Sbjct 12468 -AACGTTCAATTTGAAATCTTTACCTATTTTACGAACAGGGAATGGAAGTTTCTTTAATG 12526 Query 2349 TGTCGTATATCACTGTATGTAATTTCCGTT---TTCCCT-TATAGCCGAAACATAT-GTC 2403 || | ||| ||| ||| ||| || |||| | | || ||| ||| || || Sbjct 12527 AATCATGTATGGTTGT---TAACTTCTTTTTCCTTCCATCTCTA-CCGCTACAAATCGTT 12582 Query 2404 AATCATATACCATTGACCCATTTTTGATATTATTGT-----GTTATAAGTATTCGGTAAC 2458 | || |||||||||||||||||||| |||| || | | | || || Sbjct 12583 ATTC-CGTACCATTGACCCATTTTTGAAATTAAAGTAGAAAACTGTCCTTCTTTGGATGG 12641 Query 2459 CCTTCGTTTGACCACTTAAAACCATGATGCTCTAACCAGTTTACAATGAAAGCACCGTCA 2518 ||| |||| ||| || | || | ||| |||||| || ||||| |||| ||| ||| Sbjct 12642 TCTT--TTTGTCCATGTATATCCGTTATGTAATAACCAATTGACAATAAAAGAACCATCA 12699 Query 2519 AATTTTAGATTGTGGAAATATAAATCAG--CTTGAATTTCCATAACCCACTGCATGAATT 2576 ||||| | ||||| |||||||| || || ||| | || | ||| | |||||| | Sbjct 12700 AATTTCAAGTTGTGAAAATATAACCTAGAACTAGAA--TGAATCATCCATTCCATGAACT 12757 Query 2577 CATCTAAGCTAT-TTCCAATCTTGTAGTTGTCGAGATTACCGATTTCCATATAGCCATAT 2635 ||| ||| | | |||| || || || ||| ||||| |||||||| | |||||| Sbjct 12758 CAT-TAAAATCTGTTCCTATTTTATAATTGGAAGTTTTACCTATTTCCATCCATCCATAT 12816 Query 2636 GCCCATACACGACAATCGTCTAAC-TTTGTAGTCGTCTCAAAGTCACAACTAAACATTT 2693 |||||||| || ||||| | |||| | ||| || ||||| ||||||||| |||||||| Sbjct 12817 GCCCATACTCGGCAATCAT-TAACATCTGTTGTTGTCTCTAAGTCACAAGAAAACATTT 12874 Score = 187 bits (206), Expect = 3e-43 Identities = 723/1117 (65%), Gaps = 37/1117 (3%) Strand=Plus/Plus Query 5272 TCATATGACATTATCAATGCAATCCGTAATAGCGCTACAG-ACAATTTTAAAACATATGT 5330 ||||| |||||||| ||||| || || || |||||| || ||| || || | |||||| Sbjct 1205 TCATACGACATTATGAATGCCATTCGCAACAGCGCTTCACCACAGTTCCAACA-ATATGT 1263 Query 5331 GCCCTTAGCAAACGCCGAAAACGTTGCTGAGGTTGGTGCAGGAATTTTGGTTAACCAAAC 5390 || ||||||| || |||||| | || | || ||||| ||| || | || ||||||| Sbjct 1264 ACCACTAGCAAATGCTGAAAACATCGCACAAGTAGGTGCTGGACTTCTAGTAAACCAAAA 1323 Query 5391 TGTTCAAAATGAATTCCTTACATCGTTGGTAGACCGCATTGGGTTGGTTATTGTTAA-AT 5449 | | ||||| |||||| | | || | || ||||| || | | | || | | | Sbjct 1324 TATCCAAAACGAATTCATCATTTCACTAGTTGACCGTATCGCACTTTTCGTTCTACACAG 1383 Query 5450 CTATTTCTCTACGTAACCCACTTGCAAAATTTAAAAAAGGTGCTCTTCCAATGGGTAGAA 5509 | | || || || || | ||||| ||| || | |||| ||||| Sbjct 1384 CAAAGTCATGACA-AATGTTCTCGGTAAATTCAAACGTGGCACAATTCCGTTGGGTTCTC 1442 Query 5510 CCATTGAAGAAATTTTCACAGACATTACAAAGGAAAAACTTTACGATGCTGAAGAAGCAG 5569 |||||||||| | | ||| || | ||| || || ||| | || | || | Sbjct 1443 GTATTGAAGAAACATATATTGACCTTGTACCAGAACAAGCGTATGATCCAGATGGTGCCG 1502 Query 5570 AGCAAAAGGTGTTTGAACGTGAAATTCCAAACGTGAAAACTCTTTTCCATGAGCGTAACA 5629 | || || || |||||||||||||| | || ||||| || |||||||| || Sbjct 1503 AATCAACTGTTTTCAAACGTGAAATTCCAGATGTCAAAACACTGTTCCATGAAATCAATC 1562 Query 5630 GACAATCTTTCTATCACCAAACTATTCAAGATGATTCATTAAAAACTGCCTTCATTTCAT 5689 | ||||||||||| | ||||| |||||||| | || ||| || ||| | |||| Sbjct 1563 GTCAATCTTTCTACAAACAAACCATTCAAGACGCAAGTTTGCAAAAAGCGTTCGTATCAT 1622 Query 5690 GGGGTAACTTTGAATCTTTCATCGCATCAATCATTAACGCTATTTATAATAGTGCAGAGG 5749 |||| | ||||| |||| | | | ||| | || || || || || | | Sbjct 1623 GGGGCGAATTTGATCGTTTCGTTTCTGGCACAATTCAAGCCATGTACAACAGCAATCAAG 1682 Query 5750 TTGATGAGTATGAATACATGAAACTAATCATTGACAACTATTAC---TCAAAAGGGCTAT 5806 ||||||| | ||||||||||||| | || || | |||| |||||||| ||| Sbjct 1683 TTGATGAATTCAAATACATGAAACTGCTAATCGAT---TCTTACGCTTCAAAAGGT-TAT 1738 Query 5807 TTAAAGTTGTTA--AAGTTGA--TG-ACCCTATGACTTCTACTGGAGCACTCACAAACTT 5861 || || | | || | | || | | |||| | |||||| | | |||| Sbjct 1739 TTCAAAGTACAACCAATCTTACCTGTAACAGATGAAG-CAACTGGA------AAAGACTT 1791 Query 5862 CATCAAAAAAGCGAGAGCAACAGCCTTAAAAATGACACTTCC-ACAGGGCACACGTGATT 5920 |||||||||||| | || | | | ||||||||| || ||||| |||| | | Sbjct 1792 CATCAAAAAAGCTCGTGCCATTACAACACTAATGACACTGCCTACAGGTT-CACGCAACT 1850 Query 5921 ATAACGCAATGGCTGTTCGTACACGTTCAGACATTAGAGACGTTCATTTATTCATTGATG 5980 |||||||| | ||||||| ||| ||||||| || || | ||||| | |||| | Sbjct 1851 ATAACGCACTAGCTGTTCACACAACAACAGACATGAGCGATTTACATTTCATTGTTGACG 1910 Query 5981 CTGATTTGAACGCTGAATTAGATGTTGATGTTCTCGCAAAAGCATTCAATATGGACAGAA 6040 |||| || | || | | || || |||||||| || | ||||||||| || |||| || Sbjct 1911 CTGAATTAATGGCAACAGTTGACGTAGATGTTCTAGCTAGAGCATTCAACATCGACAAAA 1970 Query 6041 CAACATTCCTCGGCAATGTAACTGTTATTGATGGGTTTGCATCTACAGGATTAAAAGCTG 6100 ||| || |||| | || || |||| || |||||| | | || ||| ||| Sbjct 1971 CAAACTTTATCGGACAAGTTACAATTATCGACAACTTTGCAACATCTGGTTTACGCGCTA 2030 Query 6101 TTATGGTTGACAAAGATTGGTTCATGGTTTATGACA--CTCTGCAAAAGATGGAAACAAT 6158 | ||||| || ||||||||||||||||| | | | |||| |||||| | || Sbjct 2031 TCGCTGTTGATCGTGAATGGTTCATGGTTTATGATAACATTTTCAAA--ATGGAATCTAT 2088 Query 6159 CAGAAACCCACGTGGTTTGTACTGGAACTATTA-CTATCATGTATGGCAAGTGTTGAGTG 6217 | ||||||| || |||| |||||||| | ||| || | ||||||| | ||||| Sbjct 2089 TCGTAACCCACAGGGCATGTATTGGAACTACAATCTA-CACGCATGGCAAATCATGAGTA 2147 Query 6218 CTTCACGTTTTGCTAACGCTGTTGCATT------TGTCACAGGTGATGATGTTCCAGCTG 6271 | || ||||| || || ||||| ||||| | |||||| | |||| ||| Sbjct 2148 CATCTCGTTTCGCAAATGCTGTAGCATTCATTGAGGACACAGGAACGAACATTCCTCCTG 2207 Query 6272 TTACTCAGGTTATTGTATCGCCTGCCATTGCATCAGTTAAACAAGGAAAATCACAAGCAT 6331 || | ||||| || || || | |||||| ||||||| |||| | || || || Sbjct 2208 TTTCAAGTGTTATCGTTTCACCATCTATTGCAGGAGTTAAAAAAGGCGCAACAAAACAAT 2267 Query 6332 TTACTGCATATGTTCGTGCAACAGATGACAAAGAACA 6368 || || |||||||||| || || ||| ||| Sbjct 2268 TTGACGCTGTAGTTCGTGCAAACGACGATGAAGCACA 2304 Score = 185 bits (204), Expect = 1e-42 Identities = 334/486 (69%), Gaps = 2/486 (0%) Strand=Plus/Plus Query 16027 AACTTTGTTATCGGCGCTCGTGGTATCGGTAAATCATACGCTATGAAAAAACATCCTATA 16086 ||||||||||| ||||| ||||||||||||||| |||| | | ||||| || || Sbjct 9838 AACTTTGTTATTGGCGCACGTGGTATCGGTAAAACATATGGGTTCAAAAAGTATGTAATT 9897 Query 16087 AAGCGTTTTAT-AAAGCACGGTGAGCAGTTTATCTATGTTAGACGCTATAAACCAGAGTT 16145 || ||||| | ||| || ||| | |||||||||||| | ||||| || ||| | || || Sbjct 9898 AACCGTTTCTTGAAAACA-GGTAAACAGTTTATCTATTTAAGACGTTACAAATCTGAATT 9956 Query 16146 AAAGAAAATAGGCAACTATTTCAATGATATTGCACAGGAATTTCCTAACCATGAATTTAA 16205 | || ||| |||| ||| || | | ||| || ||| ||| || || Sbjct 9957 AGCAAAGGTAGCTAACTTTTTTAACAGTTTGAAACATGAGTTTGAAGGGGTTGACTTCAA 10016 Query 16206 GGTAAAAGGTAGACAATTCTGCATTGATGGTAAATTGACAGGGTGGGCGATTCCTTTAAG 16265 |||||||| | || | ||| | | |||| | |||| ||||| ||||| || Sbjct 10017 AGTAAAAGGACGTATGTTTTTCATCAACGATAAACTAGCAGGATGGGCAATTCCGTTGTC 10076 Query 16266 TGCATGGCAGAGTGAAAAATCTAATGCTTACCCTATGGTTACAACAATCATATTTGATGA 16325 ||||||| |||||| || | | |||||| ||| ||| || | ||||| || Sbjct 10077 CTCATGGCAAGCTGAAAAGTCAACGGATTACCCAGATGTTGAAACCATTTTGTTTGACGA 10136 Query 16326 GTTTATACGTGAACGTGACAATAGTGGTTATATACCAAATGAAGTTGACGCTTTATTAAA 16385 ||||| |||||| || |||||| |||| ||||| ||||||| | || || ||||| Sbjct 10137 ATTTATTCGTGAAAAAGATAATAGTCGTTACCTACCAGATGAAGTCAAAGCATTGTTAAA 10196 Query 16386 CTTGATGGACACCGTGTTTCGTACACGTGAAAATGGACGCTGTATTTGTTTGAGTAACGC 16445 ||| ||||||||||| | |||| || ||| ||| || | |||||||| Sbjct 10197 CTTCATGGACACCGTTATACGTATTCGAGAAGGCTCACGACTAATCGGAATGAGTAACAG 10256 Query 16446 TGTATCAATTATCAACCCTTACTTTGTATACTTTGGGTTAGTTCCAGATATTAATAAAAG 16505 |||||| ||| |||| || |||||| | |||||| |||||||| |||| ||||| Sbjct 10257 TGTATCTATTGTCAATCCGTACTTTCTTTACTTTTCCTTAGTTCCTAATATATCAAAAAG 10316 Query 16506 GTTTAA 16511 |||||| Sbjct 10317 GTTTAA 10322 Score = 167 bits (184), Expect = 3e-37 Identities = 718/1115 (64%), Gaps = 74/1115 (7%) Strand=Plus/Plus Query 9337 TCAACTTTTTGAATGGGAAAGGCTACCGCCTAGTGTAGACCCTAGCTATTTAGAA----A 9392 |||| | ||||||||||||| |||||||| | || ||||| | | ||||| | Sbjct 4423 TCAATTGTTTGAATGGGAAAACCTACCGCCAACCGTTGACCCACGTTTCATAGAAGTTGA 4482 Query 9393 AAAGCATTCACCAGTTTGGGTATGTTGGTTTTTATAAAGATCCACGCATTG-GTTATATT 9451 | |||| || || ||| ||| |||| ||||| ||| ||||| ||||||| Sbjct 4483 ATTGCATACAAGAG----GGTTTGTGTCATTTTTCAAAGACCCAA-CATTGAGTTATATA 4537 Query 9452 GCGTGTCAA-GGCGCACTGTCAGGGACAGTTGATCATTATAATTTACCTGACCGCTTCCA 9510 || ||| |||||| |||| || | | ||||| ||||||||||| | || || Sbjct 4538 GC-TGTAGGTGGCGCAATGTCTGGTCAACTAGATCACTATAATTTACCCACCTATTTTCA 4596 Query 9511 CGCATCATCAGTTGGATACCAAAACACAT---TTAAACTTTATAACTACAGTGATATGAA 9567 || || || | || | |||| || || ||| || |||||||| |||||||| Sbjct 4597 AGCTACAGCACC---AAACTATAACAAATCGTTTCGACTATACAACTACAGCGATATGAA 4653 Query 9568 AGAAAAGAACATGGGTGTTGCCATTTACAACAACGATCTAAAGTGTTCAACCCTTC--CT 9625 ||||| |||||||||||| || | |||||| || || | ||| | ||| | || Sbjct 4654 TGAAAAAAACATGGGTGTTTTAATATGCAACAATGA-CT--TGCGTT--ATCCTACAACT 4708 Query 9626 G---CATTAGAAATGTTTGCTCAGGATTTAGCAGAGTTGAAAGAAATTATTGCTGTTAAC 9682 | || | || |||||||| | || | ||||| | |||| |||| || || Sbjct 4709 GGAACAATTGATATGTTTGCAGAAGAACTTGCAGAAATTAAAGCCATTACAAGAGTCAAT 4768 Query 9683 CAGAATGCACAGAAAACCCCTGTTCTTATTGCGGCAAACGACAACAACCAACTGAGTCTG 9742 | ||| ||||| ||||| || ||| | ||||| | | || || |||| | || Sbjct 4769 CTGAACGCACAAAAAACACCAGTTTTGATTGCTGTCGATGATTTAAATAAACTTTCTATG 4828 Query 9743 AAAAATATTTACAATCAATATGAGGGAAATGCCCCTGTTATC-TTTGTTCACGAATCACT 9801 ||| |||||||| |||||||| || ||||| |||| |||| || ||| | || Sbjct 4829 TTAAACATTTACAACCAATATGAAGGCAATGCTCCTGCTATCGTTACATCAAAAGAAGCT 4888 Query 9802 TGACTTAGATAACTTGAAGGTGTTTAAAACAGATGCCCCATATGTTGTTGATAAATTGAA 9861 ||| || || || || || ||||||||||| || || |||||||| ||| | || Sbjct 4889 AATCTTGAATCTATT-AAAGTATTCAAAACAGATGCACCGTACGTTGTTGACAAAATCAA 4947 Query 9862 TGCTCAGAAAAACGCTGTCTGGAATGAGGTTATGACGTATCTAGGCATCAAAAACGCAAA 9921 | | ||| | || ||||||||||| | ||||| | ||| || || ||||| | || Sbjct 4948 TACACAGCGTATGGCAATCTGGAATGAGTTCATGACTTTTCTCGGTATTCAAAACACCAA 5007 Query 9922 TCTCGAAAAGAAAGAAAGAATGGTCACAAGTGAAGTAGACAGCAACGATGAGCAGATTGA 9981 | ||||| ||| | ||||| |||||| ||||||| ||| || | || Sbjct 5008 TAATGAAAAACGTGAACGCATGGTGGAGGATGAAGTCAACAGCAATAATGGTCAAGTCGA 5067 Query 9982 AAGTAGTGG--CAACATTTATTTGAAAGCCCGTCAAGAAGCTTGCAACAAAATAAGTGAG 10039 || | | | |||||| ||||| | | ||||||| || || || | || Sbjct 5068 AA--ACTCGACAAACATTATGTTGAAGTCAAGAGAAGAAGCAGTTAAAAAGATTAACGAA 5125 Query 10040 CTGTATGGACTCAACCTCAAAGTTAAATTCAGATACGACATTGTGGAACAAATGAGATTA 10099 |||| || | || | ||||| |||| |||| || ||| |||| Sbjct 5126 TTGTACGGTTTAGACATTAAAGTAAAAT-----TACG-----GT-------CTGAAATTA 5168 Query 10100 AACGCTCAGGGAATAGAAAATGTTTCACGTGGAACATTGGGCGGTGAAACAAATGGCTAG 10159 || || || ||| | |||| || | || ||| |||| || Sbjct 5169 TAC------------GACAACTTTTAA--AGGAA-----GGAGAGGACGCAATTGGCAAG 5209 Query 10160 TTACACAAT-GAAGTTAAGTACGTATATAGAAATGTGGTCTCAGTATGAAACAGGCTTAT 10218 ||||||||| ||| | | | | | ||| ||| | | || || || ||| | Sbjct 5210 TTACACAATGGAACTGAGGGAAAT-TATTGAACACTACACACAATACCTTCCAAACTTGT 5268 Query 10219 CAATGGCTGAGAAAATTGAAAAAGGGCGACCAAAACTATTTGACTTTCAATACCCGATTT 10278 |||| || || |||||| |||| || | | || || |||| | ||||| | | Sbjct 5269 CAATTGCGGAACGCATTGAAGAAGGTAGAAAACACCTGTTCAACTTCAATTACCCTTTCT 5328 Query 10279 TCGATGAGAGC-TACAGGAAAGTTTTTGAGACACACTTCATACGCAACTTTTATATGCGT 10337 | || ||| |||| ||| ||||| || | || ||||| | || || |||||| Sbjct 5329 TTTCAGA-AGCATACAAAAAACAATTTGAAACCAATTTTATACGTCATTTCTACATGCGT 5387 Query 10338 GAAATTGGTTTCGAAACAGAAGGATTGTTCAAATTTAATCTTGAAACATGGTTAATTATC 10397 |||||||| || |||||||||||| | || || || |||| ||||||||||||| ||| Sbjct 5388 GAAATTGGGTTTGAAACAGAAGGACTTTTTAAGTTCTATCTGGAAACATGGTTAAATATT 5447 Query 10398 AACATGCCGTACTTCAATAAATTGTTTGAGAGTGA 10432 |||||||| || | || ||| ||||||| || || Sbjct 5448 AACATGCCTTATTGGAACAAAATGTTTGAAAGCGA 5482 Score = 114 bits (126), Expect = 2e-21 Identities = 244/356 (69%), Gaps = 14/356 (4%) Strand=Plus/Plus Query 3225 TGCGCTTCTTTTGTGTTCTTCTCAATCTCGTTAATTTTCGCTTTA---CTAGCAACAATT 3281 || |||| |||||||| ||| |||||| || | || ||||| |||||||||| Sbjct 13382 TGAGCTTTCTTTGTGTTTCTCTTAATCTCATTCAATT---CTTTAACACTAGCAACAACA 13438 Query 3282 CCATACTTATTCTTAACAAACTGATAATTCTGATTAGCTCGGTTAGTGAATGA--TTCTT 3339 || || | ||| ||| || || || | ||||| | || |||||||||| | || Sbjct 13439 CCGTATTCATTTTTACGGAATTGGTATTCTTGATTCGATCTACTAGTGAATGAAGTAATT 13498 Query 3340 GTTTGCGTTTCCACTCATTAAACTCTTTTCGAG-TTTGAAATGATTCTAACGGTGGCAAC 3398 ||| ||||||| ||||| |||||||| |||| |||||||| | || ||| | Sbjct 13499 TTTT--GTTTCCAATCATTGAACTCTTTGCGAGTTTTGAAAT-CTGATAGTTTTGGAATA 13555 Query 3399 TCAATTTCATTGCTTAAGTCTATACCATATTTTTTCTTCGTTCGGCTAATTTTGGCTTTC 3458 || | ||||| || ||||| ||||| ||||| ||||||| ||| ||||| || Sbjct 13556 TCTACATCATTCGACAAATCTATTCCATAATTTTTAACCGTTCGGTTAAGTTTGGACTTT 13615 Query 3459 GTATTCTTGACCAGTTTTGCGTACAAGGCTTTGTCATTGTTCGTAATGCGTATACGTGAA 3518 | ||||| ||| ||| |||| | ||||| ||||||||||| || | Sbjct 13616 GCGTTCTTTGATAGTCGCTTGTATTCGGCTCTATCATTTTTCGTAATGCGAATTGGACGC 13675 Query 3519 TTTCTTGCCATGAAGCATTACACCCCTTTAACCATGTGTGGAATCCTCTCTTTTCT 3574 ||||||||||| |||| |||||||| | |||| ||| || ||||||||| Sbjct 13676 TTTCTTGCCATTTCAAATTA-ACCCCTTTCAACATGACACGAAACC-CTCTTTTCT 13729 Score = 80.6 bits (88), Expect = 3e-11 Identities = 311/476 (65%), Gaps = 36/476 (8%) Strand=Plus/Plus Query 13660 TATCTATCAATGAAAGAAATGACAGTCAATGCACAGTA--TATATTAAA--TTATTTACT 13715 ||| |||| ||| | ||||||| ||| ||||| | || | |||| | || || | | Sbjct 8399 TATTTATCGATGGATGAAATGAAAGTGAATGCTGAATACCTCTATTCATGGTTTTTGAGT 8458 Query 13716 ACCGAGAGGTTGGAC-GAAAAACGCTATTTGCGGAATGCTTGGTAACATGCAAACGGAAA 13774 | |||||||||| | || | |||||| |||||||| || ||||||||| | ||| Sbjct 8459 A----GAGGTTGGACAGCGGAAAG-TATTTGTGGAATGCTAGGAAACATGCAATCTGAAT 8513 Query 13775 GCACAATCAACCCTGGAATCTGGCAGAATCTTGATGAGGGTAACACCTCATT-------G 13827 || || ||| ||| || ||| ||||| | ||||||| ||| | Sbjct 8514 CAACCATTAACGGTGGTATATGG--GAATC--------GTTAACACCAGATTTAAACAGG 8563 Query 13828 GGATTCGGTCTTGTTCAGTGGACACCTGCAACAAAATATTTAAATTGGGCAGATAGAAAC 13887 || | ||| | || || ||||| ||||||| || ||||| ||| || | | || | Sbjct 8564 GGTTATGGTTTGGTGCAATGGACTCCTGCAAGCAAGTATTTCGATT-GGTTGTTTGATAT 8622 Query 13888 GGTCTTAAACGAGATCATATGGATAGCCAGTTGAAGCGGATACTCTGGGAAGTTGACAAC 13947 || || || ||| | ||||||| || ||| || || | | ||| | || || Sbjct 8623 GG-GATATAC-CGATAACATGGATACTCAAATGATCCGTATTATTTATGAACTGGAAAAT 8680 Query 13948 AATGAGCAATGGATA--AAC-CT--CAGG-AATATGACGTTTAAGGAATTTACAAAAAGC 14001 ||| ||||||||| | | || |||| |||||| ||| | || ||| | || | Sbjct 8681 AATCTACAATGGATACCATCACTTGCAGGCGGTATGACATTTCAAGAGTTTTCCCAATCC 8740 Query 14002 ACGAAGTCTGCAAACGAGTTAGCCATGATTTTCCTAGCCTCATATGAGCGTCCTGCAAAT 14061 || | ||| | | | ||||| ||| | || | | | ||||| |||||||| ||| Sbjct 8741 ACAGATTCTCCTTATAATTTAGCTATGTTGTTTATTGTTGCTTATGAACGTCCTGCTAAT 8800 Query 14062 CCAAATCAGCCAGAGCGGGGGACGCAAGCTGAGTATTGGTTTAAGACGTTAACTGG 14117 || ||||| ||| | | ||||| |||||||| | |||| | || ||||| || Sbjct 8801 CCCAATCAACCAAACAGAGGGACACAAGCTGAATTCTGGTATGAGTATTTAACAGG 8856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 59496421557067