Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_004313.1 Length=40149 Score E Sequences producing significant alignments: (Bits) Value seq1596 187 6e-43 >seq1596 Length=248270 Score = 187 bits (206), Expect = 6e-43 Identities = 337/491 (69%), Gaps = 4/491 (1%) Strand=Plus/Minus Query 32378 CACGAACTGAAAGAAGTCGGCGATCAGTGGCGGACACCAGACCTGCTTTTT--TGGGGCA 32435 || |||||||||||| | || ||||| ||| | |||||| |||||| | ||||| | Sbjct 107786 CATGAACTGAAAGAAATTGGTGATCAATGGTGCACACCAAG--TGCTTTGTATTGGGGAA 107729 Query 32436 TTAATGCGATGTTCGGTCCCCTAACGCTGGATCTCTTTGCTGACGACGATAACGCTAAGT 32495 ||| | || | ||| | | |||||| | ||| |||||| | || |||| Sbjct 107728 TTAGCTCAATATACGGGATTTTCAAACTGGATTTGTTTACTGACGGAAAAAATAGTAAGG 107669 Query 32496 GCCCTGTGTGGTACACCGCCGATGATAACGCGTTGGTACAAGATTGGGCGGAAATGCTGG 32555 ||| | || || || || ||||| || || || || ||| | | ||||| Sbjct 107668 CTCCTTATTTCTATACTGCAGAGGATAATGCACTGACGCAGGACTGGTCCACTAAGCTGG 107609 Query 32556 AATCAATCGGCGGTGCCGCATTCGGTAATCCACCCTATAGCCGCTCTCAGTACCACGAGA 32615 | | ||||| || || || || ||||| || ||| ||| | || ||||| | Sbjct 107608 CAGAGGTTGGCGGCGCTGCTTTTGGAAATCCGCCATATTCCCGTAGTTCCTATCACGAAA 107549 Query 32616 AGCAGGCGATCACCGGCATGACCCACATCATGGATCACACAATGGAGATGCGTGAAAAGG 32675 | ||| | ||||| ||| | ||||| ||| |||| ||||| ||||||| || || | Sbjct 107548 AACAGCCCATCACTGGCGTTGGTCACATTATGAATCATGCAATGAAGATGCGAGAGAAAG 107489 Query 32676 GCGGTCGCTATGTGTTCCTCGTTAAAGCGGCAACAAGTGAAACGTGGTGGCCGGAAGACG 32735 | |||||||||||||| | | ||||| ||||| || ||||| |||||||| || | | Sbjct 107488 GTGGTCGCTATGTGTTTTTACTAAAAGCTGCAACTAGCGAAACATGGTGGCCTGAGCATG 107429 Query 32736 CCGATCACATCATGTTTATCCGCGGTCGTATTGGCTTCGATCTCCCCGTGTGGTTTGTCC 32795 | ||||| | ||||| || ||||||||||| |||||| ||||| | |||||| || Sbjct 107428 CTGATCATGTTTGCTTTATTCGTGGTCGTATTGGTTTCGATGTCCCCCTATGGTTTAACC 107369 Query 32796 CTGCCGACGATAAGCAGAAGACCACTGGTGCATTCTTTGCTGGCGCCATTGCAATCTTCG 32855 | | |||||| |||||| | | |||||||||||||| || || || | | |||| Sbjct 107368 CAGTTAGCGATAAACAGAAGCCAAGCGGTGCATTCTTTGCCGGTGCAATAGTCGTTTTCG 107309 Query 32856 ATAAGTCATGG 32866 |||| ||||| Sbjct 107308 ATAAAACATGG 107298 Score = 104 bits (114), Expect = 6e-18 Identities = 158/220 (72%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 39812 CGCCATCAGCGCGGTTATGGTACGAAGTGGGACGTTATCCGTGCGCGTGTACTGAAGCGT 39871 |||||| ||||||||||||| | ||||||||| || ||||| || || || | ||| Sbjct 99541 CGCCATGAGCGCGGTTATGGATCTAAGTGGGACAAGATACGTGCTCGCGTTTTGCATCGT 99482 Query 39872 GATAAAGGTTTATGTCAGTTGTGCCTGCGTTCCGGT-GTGGTACGTGAGGCGAAAACTGT 39930 |||||| | ||||||| ||| || || ||| | ||| || || || || || Sbjct 99481 GATAAACATCTATGTCAAGAGTGTTTGAAGTCAGGTAGACCAACG-GAAGCCAAGACAGT 99423 Query 39931 CGACCATATTATTCCCAAAGCGCATGGCGGCACGGATACAGACAGTAATCTGCAAAGTCT 39990 ||||| || | ||||| ||||||| || || ||| || ||||| |||||| || Sbjct 99422 GGACCACATCAAACCCAAGTCGCATGGTGGTACCGATGATGATAGTAACCTGCAAGCGCT 99363 Query 39991 GTGCTGGCCATGCCATA-AGGCTAAGACAGCCCGTGAGCG 40029 ||||||| ||||||||| | || ||||| || |||| || Sbjct 99362 GTGCTGGTCATGCCATAGAAGC-AAGACGGCAAGTGAACG 99324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128352589014566