Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_004928.1 Length=167560 Score E Sequences producing significant alignments: (Bits) Value seq253 120 3e-22 seq1596 100 3e-16 >seq253 Length=360942 Score = 120 bits (132), Expect = 3e-22 Identities = 357/545 (66%), Gaps = 12/545 (2%) Strand=Plus/Plus Query 46456 ATGTCAGGATACATTCTTTTGCTTGCGCACTCTAACGCAAGTTGTTTAATATCATAGTTC 46515 ||||| |||||||| | |||||| || |||||||| || | ||||| ||||||||||| Sbjct 105012 ATGTCGGGATACATGCGTTTGCTCGCACACTCTAATGCTAACTGTTTGATATCATAGTTA 105071 Query 46516 GGATCATCTTTATAAAGATTAACACCTTCTTCAA---CAAACATAACAAGTTTAGGAAAA 46572 |||||| | | | |||||| |||| || || ||||| || | |||||| ||| Sbjct 105072 GGATCACCATATTGGTGATTAAGGCCTTTTTTAATAGCAAAC---ACTAATTTAGGGAAA 105128 Query 46573 ATAGGAGTTATTCCATCACGACCAAGACCTTTAATGCGGTTTTTAAGAATTGCTTTCTGA 46632 | | |||| | | || ||| | || || |||||||| ||||| | || || Sbjct 105129 ACGGCAGTTTTACGATTTTTACCTAACCCAGCGATACGGTTTTTTAGAATGGATTGTTGG 105188 Query 46633 ATCATTCGTTCAGTCCAGTCA-GTTCCCGTACCAAATGTAATTGTTACAAAAGGCGTTTG 46691 |||| ||| | || | | || || |||||| || ||||| || || ||||| Sbjct 105189 ATCAAGCGTGC-TTCTTGCGATGTGCCTAAACCAAACCCAAAGGTTACGAAGGGGGTTTG 105247 Query 46692 TCCGTTTGAACTAAAGAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTATAC 46751 || || | || || || || ||||| |||||| | |||||| |||||||| Sbjct 105248 ACCATTGGCGGTATGCAGTGTGTTCACTTCGTATTCAAGGGATTGGAAGGCATCGTAACA 105307 Query 46752 GTCTTTTTCTGTTTTAGACTGGGCATAATTCAACGCATCAGCGATTTGCCATTTTTCTGC 46811 |||||||| |||| | ||||| |||||| | || ||| || || Sbjct 105308 TTCTTTTTCGGTTTGGCTATCAGCATAGCCTTTCGCATCTTCAATGCCCCAATTGATCGC 105367 Query 46812 ATCCTCAATATGTTTTGCATAGGTGCGTTTAACATAAGGAGAAAGTACTTTATC--TACA 46869 | | ||||||| ||||| || | |||||||||| ||| | || ||| | | Sbjct 105368 TGTTTTTAGATGTTTTTCATAGCTGATGTGGACATAAGGAGCAAGGATTTCATCAATGCG 105427 Query 46870 TTAGCAAAAGTCGTTCCGCCGTATTGATGGGAAGCAACCTGTGCAGTAATTTGTGCCATA 46929 | | | || || || || || |||| ||| || || || ||||||| || | Sbjct 105428 GTTG--ATGGTGGTGCCACCATAAATATGGCTAGCTACTTGAGCGATAATTTGGGCTGTC 105485 Query 46930 ATTGCAGTAGCAACGCCAATAGATTTAGGCGTTTCAATTTGAGCATTGCCTAATTTAAAT 46989 | ||| || ||| | ||| |||||||| | || |||| ||||| || | |||||| Sbjct 105486 ACTGCGGTGGCAGTGGAAATTGATTTAGGAGGCTCTATTTCGGCATTACCCATTTTAAAC 105545 Query 46990 CCATT 46994 ||||| Sbjct 105546 CCATT 105550 >seq1596 Length=248270 Score = 100 bits (110), Expect = 3e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 62076 GTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 62135 || || ||||||| |||||||| |||||||||| ||||||||||||||| || || Sbjct 48922 GTGAAAGTACGAGTAATAACGTCTTGCTGCTGTTCTTTAGTCAGAGAGTTAAAACGCACC 48863 Query 62136 GCATAACCGGATACACGGATGGTCAGCTGCGGATA 62170 |||||||| ||||||||||| ||||| || ||||| Sbjct 48862 GCATAACCCGATACACGGATAGTCAGTTGTGGATA 48828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 536052521529600