Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq964 123 2e-23 seq1190 98.7 7e-16 seq1304 93.3 3e-14 >seq964 Length=291957 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || || | ||| | ||| |||||||| | || |||||||| ||||||||||| Sbjct 215638 CCACCACGCAAACGTAATACCAAATGCAATGTAGATTCTTTTTGTATATTATAATCAGAC 215579 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 ||| ||| | || ||||||||||| || ||||| ||||| ||||| || || | || Sbjct 215578 AATGTGCGCCCGTCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGG 215519 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | |||||||| ||| |||||| ||| || | ||| |||||| | ||||| || Sbjct 215518 ATTCCTTCTTTGTCTTGAATTTTAGCTTTAACATTTTCAATAGTATCAGAAGGCTCAACT 215459 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | || || ||||| || || || ||||| ||||| ||||||||| Sbjct 215458 TCCAAAGTGATGGTTTTGCCAGTCAATGTCTTAACAAAGATTTGCATG 215411 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| || | ||| | || ||||| || || || ||||||||||| ||||||||| Sbjct 215867 ACCACCACGCAAACGCAATACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAATCGGA 215808 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 ||| || |||| ||||| ||||| || || || ||||| || || || || | || Sbjct 215807 TAAAGTGCGGCCATCTTCCAACTGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGGGG 215748 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||| ||| ||||| ||| || | | | |||||| | || || || Sbjct 215747 AATACCTTCTTTGTCTTGGATTTTAGCTTTAACATTTTCTATAGTATCCGAAGGTTCAAC 215688 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | |||||||||||||| ||||| || || || || ||||||||| Sbjct 215687 CTCCAATGTAATTGTTTTACCCGTTAATGTTTTAACGAAAATTTGCATG 215639 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || || | ||| | || ||||| || || || ||||||||||||||||||||| Sbjct 215410 CCACCACGCAAACGTAGAACCAAGTGGAGAGTAGATTCTTTTTGAATATTATAATCGGAC 215351 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 || || | || ||||||||||| || ||||| || | ||||| || || | || Sbjct 215350 AAAGTGCGTCCGTCTTCCAATTGTTTACCGGCAAAAATTAGACGTTGTTGATCTGGGGGA 215291 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||| || |||||| |||||| || || | ||| ||||| | || || || Sbjct 215290 ATACCCTCCTTATCTTGAATTTTAGCCTTAACATTTTCAATCGTATCCGAAGGTTCGACC 215231 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || || || || |||||||||||||| || |||||||| Sbjct 215230 TCAAGGGTGATGGTCTTGCCAGTTAAAGTCTTCACGAAGATTTGCAT 215184 Score = 89.7 bits (98), Expect = 4e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| ||||||||||| || ||||| ||||| ||||| ||||| | || | |||||| | Sbjct 216811 CATCTTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGGTCTGGGGGAATACCTTCCT 216752 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 ||||| || || ||||| | ||| ||||| | || || || || | || | Sbjct 216751 TATCTTGGATCTTAGCCTTGACGTTTTCAATGGTATCGGAAGGTTCAACTTCCAAAGTGA 216692 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | ||||| ||||| ||||| ||||| || || ||||| Sbjct 216691 TGGTTTTTCCGGTCAAAGTTTTCACGAAGATCTGCAT 216655 >seq1190 Length=275307 Score = 98.7 bits (108), Expect = 7e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 || ||||| || | ||| |||||||||||||| ||||| | ||| |||| Sbjct 186884 AATACCAAGTGCAAAGTGGATTCTTTTTGAATATTGTAATCAGAGAGAGTACGGCCATCT 186825 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 |||||||||||||| || || ||||| ||||| || || | || | |||||||| || Sbjct 186824 TCCAATTGTTTTCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCC 186765 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 ||| || |||||| | ||| ||| || | |||||| || || | || || || Sbjct 186764 TGAATCTTGGCTTTGACATTTTCAATAGTGTCGGACGGCTCGACCTCAAGAGTGATGGTC 186705 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| |||| || || ||||| || ||||| Sbjct 186704 TTACCCGTTAGGGTTTTGACAAAAATCTGCAT 186673 >seq1304 Length=336898 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||||||||| ||| || ||||| || || || ||| || || |||| ||| Sbjct 274191 ACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATCTTCC 274250 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 |||||||| || || || ||||| ||||| || || | || | ||||||||| ||| Sbjct 274251 AATTGTTTACCAGCGAAGATCAAACGTTGTTGATCTGGGGGGATACCTTCTTTGTCTTGG 274310 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 ||||| ||||| | ||| || || | ||||| || || | ||||| || ||| Sbjct 274311 ATTTTGGCCTTGACATTTTCAATGGTGTCGGAAGGCTCAACTTCCAAGGTAATGGTCTTA 274370 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || |||||||| || || || || ||||| Sbjct 274371 CCAGTTAAAGTTTTGACGAAGATCTGCAT 274399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354770193241524