Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_005069.1 Length=46339 Score E Sequences producing significant alignments: (Bits) Value seq1596 168 2e-37 >seq1596 Length=248270 Score = 168 bits (186), Expect = 2e-37 Identities = 606/934 (65%), Gaps = 34/934 (4%) Strand=Plus/Minus Query 15140 TATCGTGATCAGTCGGAGCGAAAGCAAATGCTTCGTTCTGCAGTTGCCCCTGAGAACG-T 15198 ||||| |||||||| ||||| ||||| ||| | ||||| || ||| | || |||| | Sbjct 85958 TATCGGGATCAGTCTGAGCGCAAGCAGATGTTGCGTTCATCAACTGCATCAGA-AACGAT 85900 Query 15199 GGTCATTGGTAAAACGGTTGTATCCGGATTATTGATGTTCGCGGAAGAAGAGCCGGGGGA 15258 | | |||||||| || || || | | | ||||| |||||||||| || || Sbjct 85899 AATTGTGGGTAAAACTGTATGCTCAGGGCTGCTTTTTTTCGCAGAAGAAGAGCGCGGTGA 85840 Query 15259 GCAGCAAGATGGAGAGTGGGTACATTTAGTCATAGTACTGGC-----CGGC-CACCCTAT 15312 ||| ||||| | | || | | ||| |||| | ||||| |||| ||| | Sbjct 85839 GCA---AGATGAAAA-TGAG--CGATTATTCATGGCGCTGGCACTCGCGGCTCACAAGGT 85786 Query 15313 TGATCGGATAGGTCGTATCTGGTTGGGTGATGATTTAATCAGTACCTTTGAAGACTATGC 15372 ||| | || ||| | || ||| || |||||| | || | || || | || | || Sbjct 85785 TGACCACATCGGTAGAATTTGGCTGAATGATGACCTGATTGGCACTTTCGGTGATAAAGC 85726 Query 15373 TACCTGGGAACTTCATAATGATCGGTCGACCTGCGACCCTTTCATGCTTGAAAAATGT-C 15431 | || ||||||| ||| | || ||||| | |||||| || |||| | Sbjct 85725 GGGTTATGAGTTTCATAACTCCCGGACTGATTGTGACCCATACATGCTA-AAGAATGCAC 85667 Query 15432 CGTCATGGAAAGAGGATATGATAGGTAAAGGGTTGGCATGGCTCAGAGTATCACTCAAGT 15491 | |||||||||||||| ||||| || | || ||||||||| | || || | || | | Sbjct 85666 CATCATGGAAAGAGGACATGATCGGGGATGGTTTGGCATGGTTACGATTAACGCTGAGAT 85607 Query 15492 TTAATGCAGAAAAATTCCCGTATGGCTTACCGAATATTAAAGCTGAGGTCTGGGGGAAAA 15551 |||| |||||||||||||| || | || || | |||| ||||| ||||| || Sbjct 85606 ACGATGCTGAAAAATTCCCGTACGGTGTGCCAAACGTCAAAGTAGAGGTTTGGGGTAAGC 85547 Query 15552 AGTTGTATGACCCACGAACTGGTATGACTGAGTGGAGCAATAATCTGGCTCTGGGCGTAT 15611 || | | || || || || || | |||||||| ||| ||| |||| ||| Sbjct 85546 AGCTATTCGATCCTCGCACGAATAAAATAATCTGGAGCAACAATGGGGCGCTGGTCGTTC 85487 Query 15612 TAGATTATTATCGCTCAGT--GCTGAAGGTTCCTGATACAGAAATTAATTGGGAACAATT 15669 | |||| |||||| ||| || || |||||| | || ||| ||| ||| ||| Sbjct 85486 TCGATTTTTATCG--TAGTTATCTTGGTGTGCCTGATGCTGATATTGATTTTGAATCATT 85429 Query 15670 TAAGGAAGCGGCAAATATTTGTGCTGAACTGATAGTCAATCCTGAAGAGCAGTAT----G 15725 ||||| ||| ||| || | |||| |||| | || | || |||| || | | Sbjct 85428 TAAGGTAGCTGCAGATCTGTGTGACGAACAAGTCGTTAGCCCGGAAG----GTGTTGCCG 85373 Query 15726 AAGCCCGTTATACAATGAATGGTAGCTTTGATTTATCAGAAACCCCCTCATCATTATTAG 15785 || | || || ||||| ||||| || ||| | || ||| | || |||| || | | Sbjct 85372 AACCACGCTACACAATTAATGGGGCCTATGAACTTTCTGAATCTCCAGCATCGATACTCG 85313 Query 15786 AGTCTATGCATTTATGCTGTGCGGGTGAACCGACTTATATTGCTGGCCAGCATGGAATAC 15845 | ||||| |||| ||| | || ||||| ||| | || ||| |||| || || Sbjct 85312 ATCACATGCACAAATGCATTGCAGCGGAGCCGACCTATGTAGCCGGCAAGCACGGGATTT 85253 Query 15846 TGGTTGGCGCTTATTATGGCCCTCCACAATTAACGTTAAATGAAC---ATCAAATGGCCG 15902 | | ||||| ||||||| || ||| | | ||||| ||||||| | Sbjct 85252 TAATGCAGGCTTACAATGGCCCAGCAGTATT---GCGCATTGAACCGAATCAAATCATTG 85196 Query 15903 ATTCCGTTCAAATCACAACGGAAACTTCGATGCGTGATGCGACCAATGCCATTTATGGGA 15962 || ||||| | ||||| ||||| | |||| ||||| || ||||| |||||||||| Sbjct 85195 ATACCGTTAATATCACGCCGGAACTGGCTTTGCGCGATGCCACTAATGCGATTTATGGGA 85136 Query 15963 CTTTCGTTGACTGGGAGCAGCAATCTACCAAGATTGATTTTACTCCAGTTCGCGTGAATG 16022 | || ||||| |||||| | | ||| | ||| ||| || || | | | Sbjct 85135 CGTTTGTTGATGCTGAGCAGTTGTACATCAAAACTGACTTTGAGCCTGTCATTATCGAAG 85076 Query 16023 AATGGATTGTCGAAGATGGCTTAGAAATTAAAGA 16056 ||||||||| |||||||| |||||||| ||||| Sbjct 85075 AATGGATTGATGAAGATGGGTTAGAAATCAAAGA 85042 Score = 140 bits (154), Expect = 1e-28 Identities = 302/446 (68%), Gaps = 17/446 (4%) Strand=Plus/Minus Query 8278 ATATGGCTGG---AAAATCCTCGCCAGAATACGCCATGCTCCCAGCTGGGGTTGTTGTTA 8334 ||||||||| |||||| || || ||||| || ||| | || || || | | |||| Sbjct 92203 ATATGGCTGATAAAAAATCATCCCCTGAATATGCAATGTTGCCTGCCGGCACTATCGTTA 92144 Query 8335 AATGGGGT--GCTGTTGGCGATACCTCCTTAACA-ATGAAGCCGTTGGTTAACTGTAAGG 8391 ||| ||| || | || |||||| | | || ||||| | ||| ||||| || | Sbjct 92143 AATTTGGTAAGCCG--GGTGATACCGT-TGAGCAGATGAAAGCACTGGAAAACTGCAAAG 92087 Query 8392 CTGTTGGTGCTACTGGTTTAACTGGTGGCTATGTAGATTGCACTACTTTAATCGATACGA 8451 | || || || || |||||||| || | ||| ||||||||||| | ||||||| | Sbjct 92086 CAACAGGCGCAACGGGGTTAACTGGCGGGTTTGTTGATTGCACTACGCTTATCGATAAAA 92027 Query 8452 ATAAACAGTCTATTTCTGATTTGCCTGAAGGACCTGAAAAATCTTTAGGGTTTATTGACG 8511 | ||||| || || || ||||| || || |||||||||||||| | |||||||| || | Sbjct 92026 ACAAACAATCAATCTCCGATTTACCGGATGGACCTGAAAAATCACTTGGGTTTATCGATG 91967 Query 8512 ATCCGGAAAATGAAGATTTTGCGGCATTGCTTACCGCCGCAGCTGCACGTGAGACTGTAC 8571 |||| || |||| |||||||| || || | | ||| || ||| ||||| || | Sbjct 91966 ATCCAGAGAATGCGGATTTTGCTGCGTTTTTGAACGCTGCGAATGCCCGTGAAGTCGTGC 91907 Query 8572 AGTTTTATATGGAATTGCCGAATGGCCGTACAGCCACGCAAATATTAGCGCTTTCAGGTT 8631 ||||||| | || | || || |||||||| || || || || | || || | Sbjct 91906 AGTTTTACCTTGAGCTACCTAACAAACGTACAGCAACCATGATTTTGGCATTATCTGGCT 91847 Query 8632 GGCAGTTG----GCCGAGGTTTCTGCCCCTGCAAATGAAGTGATCCAGATAGAGGTTAAG 8687 || | || ||| | || || || ||||| || ||||| || || || Sbjct 91846 GGGAAATGAATAGCC----TGGAAGCGCCCGCGAATGAGGTTATCCAAATTACTGTAAAA 91791 Query 8688 GGTAAGCAAAATAATATTGTATGGGG 8713 |||||||||||||| || |||||| Sbjct 91790 GGTAAGCAAAATAACATCACATGGGG 91765 Score = 109 bits (120), Expect = 2e-19 Identities = 118/154 (77%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 9335 ACAGTT-TGGGTACGTTAGAGGAAGCGGaaaaaaaCTAACAGACTCGCCCTGGCTAAAGT 9393 |||||| ||| | ||| |||||||| |||||||||||| |||| |||| || |||| Sbjct 91430 ACAGTTATGGCTCTGTT-GAGGAAGCCAAAAAAAACTAACCAACTCACCCTATCTTAAGT 91372 Query 9394 TAATTTTTCAGCTTGCAGATCGCTGGGGCGAGCCTGATCCGCGCAAAATAGCGGAACTGC 9453 | ||||| || || || || | ||||| ||||| || || ||||||||||| || ||| Sbjct 91371 TGATTTTCCAACTGGCTGACAGATGGGGTGAGCCAGACCCACGCAAAATAGCACAATTGC 91312 Query 9454 CGGTTCATATTATTATGCACTGGCAGGCATTTTT 9487 | | ||||||| | ||||||||||| ||||| Sbjct 91311 CTGCGGATATTATCACTCACTGGCAGGCTTTTTT 91278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148160186082706