Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_005083.2 Length=244834 Score E Sequences producing significant alignments: (Bits) Value seq253 185 1e-41 >seq253 Length=360942 Score = 185 bits (204), Expect = 1e-41 Identities = 955/1504 (63%), Gaps = 77/1504 (5%) Strand=Plus/Minus Query 7756 CGGCGATATTCATTTTCACGACCTTGATTATAGCCCACTATTCCCGCAATTCAACTGTAT 7815 ||| || ||||||| |||||| || |||||| ||| | ||||| || |||||||| Sbjct 105638 CGGTGAAATTCATTATCACGATCTCGATTATGCGCCATTTTTCCCCATGTTTAACTGTAT 105579 Query 7816 GCTTATCGACATCAAGGGGATGTT--CGAAGGTGGGTTCAAAATGGGTAACGCTGAAATT 7873 ||| || || | | || ||||| | || |||||| ||||||||||| || ||||| Sbjct 105578 GCTGATTGATCTTGAAGGCATGTTAACTAA--TGGGTTTAAAATGGGTAATGCCGAAAT- 105522 Query 7874 GAAGAGCC----AAATAGCATTGCGACTGCTGCGACTATCGTAACTCAGATCATTCAGCA 7929 |||||| |||| ||| | ||||| | | | | | || || || || Sbjct 105521 --AGAGCCTCCTAAATCA-ATTTCCACTGCCACCGCAGTGACAGCCCAAATTATCGCTCA 105465 Query 7930 AGTAAGCAGCCACATCTATGGCGGCAACACAATCAATCGCATCGACGAAGTGCTTGCTCC 7989 |||| ||||| || ||||| |||| ||| ||||| ||||| || ||| | |||||||| Sbjct 105464 AGTAGCTAGCCATATTTATGGTGGCACCACCATCAACCGCATTGATGAAATCCTTGCTCC 105405 Query 7990 TTATGTTCGCAAGTCGTACTACAAATGGTTAGAAAT--CGGTCGAGAAGAACATCCAGAT 8047 |||||| | || || | ||| || ||| || || | | ||| | Sbjct 105404 TTATGTCCACATCAGCTATGAAAAACATCTAAAAACAGCGATCAATTGGGGCATTGA--- 105348 Query 8048 TCAGATTCAAAAGCCGCGATCTTTGCTCGTAAACGTGTTGAGAAAGAAACGTATGATGCG 8107 |||| | |||| | | |||| || | || |||||| || ||||| Sbjct 105347 --AGATGCGAAAGGC------TATGCTGATAGCCAAACCGAAAAAGAATGTTACGATGCC 105296 Query 8108 TTTCAGACTTTTGAATACCAAGTCAATACAATGCAGACTTCAAATGGTCAGACACCATTC 8167 || || | |||||||| |||| || ||| |||| || | |||||||| || || ||| Sbjct 105295 TTCCAATCCCTTGAATACGAAGTGAACACACTGCATACCGCCAATGGTCAAACCCCCTTC 105236 Query 8168 ACGACAATCAACTTCGGTTTAGGTACTTCGTGGGAAGAGAAACTGATTCAGAAAAGCATT 8227 || | || |||||||| || ||| |||| |||| || || |||| Sbjct 105235 GTAACCTTTGGGTTTGGTTTAGGCACATCGCAAGAAGCACGCTTGATCCAACAATCCATT 105176 Query 8228 CTGCAAAATCGTATTGCTGGTCTAGGCAAGACTAAGAAAACTGCTATCTTCCCGAAACTT 8287 || |||| ||||| ||||| |||| || | | |||||||| | ||||| ||| | Sbjct 105175 CTAAAAAACCGTATCGCTGGGTTAGGTAAAAATCGTAAAACTGCCGTTTTCCCTAAATTA 105116 Query 8288 GTTTTCACGTTGAAAGACGGTGTTAACTTGAAAGAAGGTGATCCTTGTTACGGAATCAAG 8347 || || | | ||| | || |||| || | ||||||||| || | ||||| Sbjct 105115 GTGTTTGCTATTAAAAAAGGCCTTAATCACCAATATGGTGATCCTAACTATGATATCAAA 105056 Query 8348 AAGCTTGCTCTTGAGTGTGCAAGTAAACGCATGTACCCAGACATTTTGAACTATGAAAAG 8407 || | || | |||||||| || ||||||||||| || ||||| || |||||||| || Sbjct 105055 CAGTTAGCATTAGAGTGTGCGAGCAAACGCATGTATCCCGACATCTTAAACTATGACAAA 104996 Query 8408 CTAGTTGAAACAACTGGCGGATTCAAGTCGCCTATGGGATGTCGTTCATTCTTGGGTGAA 8467 | || || ||| ||| || || |||| ||||| || || ||||| |||| Sbjct 104995 GTTGTCGATGTAACGGGCTCGTTTAAAACGCCAATGGGCTGCCGCAGCTTCTTAGGTGTC 104936 Query 8468 TGGAAAAATGAAGATGGCGA--AACTGTATTCGACGGTCGTAATAACTTAGGTGTTGTTT 8525 | | | ||| ||||| | || | || || || |||||||| |||||||| || Sbjct 104935 T---ACGAAGAAAATGGCCAACAAATTCAT--GATGGCCGTAATAATTTAGGTGTCATTA 104881 Query 8526 CTATAAACATCCCGCGTATTGCAATCGAAGCGTCGGGAGACACTGAA----CGTTTCTTC 8581 | ||| | ||||||||||| || |||| || || || |||| ||||| | Sbjct 104880 GCCTTAACCTGCCGCGTATTGCCATTGAAG---CGCAAGGCAATGAAGACGCGTTTTGGC 104824 Query 8582 GAGATCTTGCACGAACGTTGTACACTAGCTTACGAAGCGTTGATGTTGCGTATCAAGCGT 8641 | || | | ||||| | | || | |||| |||||| || || || Sbjct 104823 AACGACTCG-AAGAACGCCTAGCGATCGCCAAAAAAGCCTTGATGACACGCATTGCACGC 104765 Query 8642 TTTGACGATGTTACTGCATCAGTTGCACCGATTCTGTACTGTGAAGGCGCTATGGGCGTA 8701 | || |||| | ||| |||||||| || || || |||||||| || ||| Sbjct 104764 CTAGAAAATGTCAAAGCACGCGTTGCACCTATCCTATATATGGAAGGCGCCTGCGGAGTA 104705 Query 8702 CGCTTGAAGCCAACTGATAAAGTCAGTGAAGTGTTCAAGAACGGTCGCGCAAGTATCTCA 8761 || | || || ||||| || || | || || |||||||||||| || ||| Sbjct 104704 CGACTCAAAGCAGATGATAGTGTGGCGGAGATCTTTAAAAACGGTCGCGCATCCATATCA 104645 Query 8762 CTCGGTTACATCGGTCTGCATGAGGCTGT-AACGCTGCTTTCGCCTGACAAAGACATG-- 8818 | || || || || | |||||| | | || || || | |||| |||| Sbjct 104644 TTAGGCTATATTGGCTTACATGAGACAATCAATGCACTATTTGGTACACAACAGCATGTG 104585 Query 8819 ------CACACATTCGAGTCGCAGCACAAGCAATTCCTTGCTGAAAAGATTGTTGAGACG 8872 || |||| | | || | |||| || | |||||| || || Sbjct 104584 TACGACAACCCATT--ATTAAGAGAAAAAGCCATCGC----------GATTGTGGA-TCG 104538 Query 8873 CTTA----GAGCGTACACAGACGCATGGAAAGAACTGACTGGCTACGGATTCAGTCTATA 8928 | || |||| || || | |||||||| | || ||||| || || || || || Sbjct 104537 CCTACGCCAAGCG---ACCGATGAATGGAAAGCAGAAACAGGCTATGGTTTTAGCCTTTA 104481 Query 8929 CAGCACGCCAAGCGAATCGCTATGTGATCGTTTCTGTCGTCTCGATCAAGAGAAATACGG 8988 ||||| ||||| ||| | ||||||||||||||||| || ||| | | | || Sbjct 104480 TAGCACCCCAAGTGAAAACTTGTGTGATCGTTTCTGTCGCCTTGATACTGCTGAGTTTGG 104421 Query 8989 TATCATTACGGGTATCAACGACAAAGACTATTACACGAACTCGTTT-CACTTAGATGTGT 9047 | || ||| | | || |||| || ||||| || | |||| ||| | || ||| Sbjct 104420 GGTTATCGAAGGTGTTACGGAAAAAGGTTACTACACCAA-TAGTTTCCACCTTGA--TGT 104364 Query 9048 TCAAGAA--AGTGAATCCGTTCGAGAAGATTGATTTCGAAGCAG-CATACCCAATTCATG 9104 | || || || || || | ||| ||||||||||| ||| ||| ||||||| || | Sbjct 104363 TGAAAAACGCGTTAACCCATACGATAAGATTGATTTTGAA-CAGCCATACCCTGCTCTCG 104305 Query 9105 CGAATGGTGGTTTCATCTGCTATGCTGAATTCCCGAACATGCGAGACAACATCAAAGGTC 9164 | ||||| ||||| || ||||| | || | || ||| | | ||||| | |||| | Sbjct 104304 CAAATGGCGGTTTTATTTGCTACGGCGAGTATCCAAACTTACAGCACAACTTGAAAGCAC 104245 Query 9165 TAGAGCGCGTATGGGATTACGCATATAAGAAAGTTGCGTACTTCGGCACAAACACGCCGA 9224 | || ||| ||||| ||| ||| || | || | || | || || |||||||| | Sbjct 104244 TTGAAGACGTTTGGGACTACAGCTATGAGCATGTACCTTATTATGGAACCAACACGCCTA 104185 Query 9225 TTGA 9228 |||| Sbjct 104184 TTGA 104181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 783324026715120