Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28]
1,713 sequences; 434,128,924 total letters
Query= NC_005137.2
Length=131160
Score E
Sequences producing significant alignments: (Bits) Value
seq964 116 3e-21
seq1304 93.3 4e-14
>seq964
Length=291957
Score = 116 bits (128), Expect = 3e-21
Identities = 153/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 19997 AACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCT 20056
|| |||||||| | |||||||||||||||||| || ||||| || || |||
Sbjct 215623 AATACCAAATGCAATGTAGATTCTTTTTGTATATTATAATCAGACAATGTGCGCCCGTCT 215564
Query 20057 TCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCG 20116
|||||||||||||| ||| |||| | | |||||||| || | |||||||||||
Sbjct 215563 TCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGGATTCCTTCTTTGTCT 215504
Query 20117 GCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTT 20176
|||||| ||| || | ||| || ||| ||| || ||||| || ||||||
Sbjct 215503 TGAATTTTAGCTTTAACATTTTCAATAGTATCAGAAGGCTCAACTTCCAAAGTGATGGTT 215444
Query 20177 TTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208
||||| ||||| || || ||||| ||||||||
Sbjct 215443 TTGCCAGTCAATGTCTTAACAAAGATTTGCAT 215412
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041
|| || || || | ||| ||||| || || |||||||||||||| ||||| ||||||
Sbjct 215866 CCACCACGCAAACGCAATACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAATCGGAT 215807
Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101
| ||| ||||||||| ||||| || || |||| | | ||||||||| |||
Sbjct 215806 AAAGTGCGGCCATCTTCCAACTGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGGGGA 215747
Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161
| ||||||||||| ||||| ||| || | | | || ||| ||||||
Sbjct 215746 ATACCTTCTTTGTCTTGGATTTTAGCTTTAACATTTTCTATAGTATCCGAAGGTTCAACC 215687
Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208
|||| ||||| ||||| || || || ||||| || |||||||||||
Sbjct 215686 TCCAATGTAATTGTTTTACCCGTTAATGTTTTAACGAAAATTTGCAT 215640
Score = 95.1 bits (104), Expect = 1e-14
Identities = 180/264 (68%), Gaps = 1/264 (0%)
Strand=Plus/Minus
Query 19946 ATTTTATTATAAAATTTAAATATATT-TTATCATTTTCCTCCTCGTAACCTCAACACCAA 20004
|| ||||| | ||||||||| ||| ||| || ||||| || | | | ||||||
Sbjct 217146 ATATTATTGTTAAATTTAAAAATAGAATTAATATGCGCCTCCACGAAGACGTAGCACCAA 217087
Query 20005 ATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTG 20064
||| || || || || ||||| |||||||| || || || | |||||||| |||
Sbjct 217086 ATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAGGTACGACCATCTTCCAGTTG 217027
Query 20065 TTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTT 20124
||| || || | || | | || ||||| ||| | ||||| || || |||||
Sbjct 217026 TTTACCGGCGAAGATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTATCCTGGATTTT 216967
Query 20125 TTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGT 20184
|| || | ||| | |||| |||||| ||||| || ||||||||||||||
Sbjct 216966 AGCCTTTACGTTCTCAATGGTATCGGAAGGTTCGACTTCCAAAGTGATGGTTTTGCCGGT 216907
Query 20185 CAACGTTTTGACAAAAATTTGCAT 20208
||| ||||| || || ||||||||
Sbjct 216906 CAAGGTTTTAACGAAGATTTGCAT 216883
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059
||||| || || |||||||||||||| || || |||||| || ||| ||||||
Sbjct 215392 ACCAAGTGGAGAGTAGATTCTTTTTGAATATTATAATCGGACAAAGTGCGTCCGTCTTCC 215333
Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119
|||||||| || ||| |||| || | |||||||| ||| | || || || || |
Sbjct 215332 AATTGTTTACCGGCAAAAATTAGACGTTGTTGATCTGGGGGAATACCCTCCTTATCTTGA 215273
Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179
||||| || || | ||| | ||| |||||| || | ||| ||||| |||
Sbjct 215272 ATTTTAGCCTTAACATTTTCAATCGTATCCGAAGGTTCGACCTCAAGGGTGATGGTCTTG 215213
Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCATTTTT 20212
|| || || || || || || ||||||||||||
Sbjct 215212 CCAGTTAAAGTCTTCACGAAGATTTGCATTTTT 215180
>seq1304
Length=336898
Score = 93.3 bits (102), Expect = 4e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059
|||||||||| || ||||| ||||| |||||||| ||| || || | |||||||
Sbjct 274191 ACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATCTTCC 274250
Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119
|||||||| || || | || | | |||||||| ||| | |||||||||||
Sbjct 274251 AATTGTTTACCAGCGAAGATCAAACGTTGTTGATCTGGGGGGATACCTTCTTTGTCTTGG 274310
Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179
||||| || || | ||| | ||| ||| || ||||| ||||||||| ||
Sbjct 274311 ATTTTGGCCTTGACATTTTCAATGGTGTCGGAAGGCTCAACTTCCAAGGTAATGGTCTTA 274370
Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208
|| || || |||||||| || || |||||
Sbjct 274371 CCAGTTAAAGTTTTGACGAAGATCTGCAT 274399
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419578440199353
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |