Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq964 116 3e-21 seq1304 93.3 4e-14 >seq964 Length=291957 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 19997 AACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCT 20056 || |||||||| | |||||||||||||||||| || ||||| || || ||| Sbjct 215623 AATACCAAATGCAATGTAGATTCTTTTTGTATATTATAATCAGACAATGTGCGCCCGTCT 215564 Query 20057 TCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCG 20116 |||||||||||||| ||| |||| | | |||||||| || | ||||||||||| Sbjct 215563 TCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGGATTCCTTCTTTGTCT 215504 Query 20117 GCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTT 20176 |||||| ||| || | ||| || ||| ||| || ||||| || |||||| Sbjct 215503 TGAATTTTAGCTTTAACATTTTCAATAGTATCAGAAGGCTCAACTTCCAAAGTGATGGTT 215444 Query 20177 TTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||| ||||| || || ||||| |||||||| Sbjct 215443 TTGCCAGTCAATGTCTTAACAAAGATTTGCAT 215412 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || || || | ||| ||||| || || |||||||||||||| ||||| |||||| Sbjct 215866 CCACCACGCAAACGCAATACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAATCGGAT 215807 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| ||||||||| ||||| || || |||| | | ||||||||| ||| Sbjct 215806 AAAGTGCGGCCATCTTCCAACTGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGGGGA 215747 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||||||||| ||||| ||| || | | | || ||| |||||| Sbjct 215746 ATACCTTCTTTGTCTTGGATTTTAGCTTTAACATTTTCTATAGTATCCGAAGGTTCAACC 215687 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| ||||| ||||| || || || ||||| || ||||||||||| Sbjct 215686 TCCAATGTAATTGTTTTACCCGTTAATGTTTTAACGAAAATTTGCAT 215640 Score = 95.1 bits (104), Expect = 1e-14 Identities = 180/264 (68%), Gaps = 1/264 (0%) Strand=Plus/Minus Query 19946 ATTTTATTATAAAATTTAAATATATT-TTATCATTTTCCTCCTCGTAACCTCAACACCAA 20004 || ||||| | ||||||||| ||| ||| || ||||| || | | | |||||| Sbjct 217146 ATATTATTGTTAAATTTAAAAATAGAATTAATATGCGCCTCCACGAAGACGTAGCACCAA 217087 Query 20005 ATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTG 20064 ||| || || || || ||||| |||||||| || || || | |||||||| ||| Sbjct 217086 ATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAGGTACGACCATCTTCCAGTTG 217027 Query 20065 TTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTT 20124 ||| || || | || | | || ||||| ||| | ||||| || || ||||| Sbjct 217026 TTTACCGGCGAAGATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTATCCTGGATTTT 216967 Query 20125 TTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGT 20184 || || | ||| | |||| |||||| ||||| || |||||||||||||| Sbjct 216966 AGCCTTTACGTTCTCAATGGTATCGGAAGGTTCGACTTCCAAAGTGATGGTTTTGCCGGT 216907 Query 20185 CAACGTTTTGACAAAAATTTGCAT 20208 ||| ||||| || || |||||||| Sbjct 216906 CAAGGTTTTAACGAAGATTTGCAT 216883 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 ||||| || || |||||||||||||| || || |||||| || ||| |||||| Sbjct 215392 ACCAAGTGGAGAGTAGATTCTTTTTGAATATTATAATCGGACAAAGTGCGTCCGTCTTCC 215333 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 |||||||| || ||| |||| || | |||||||| ||| | || || || || | Sbjct 215332 AATTGTTTACCGGCAAAAATTAGACGTTGTTGATCTGGGGGAATACCCTCCTTATCTTGA 215273 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 ||||| || || | ||| | ||| |||||| || | ||| ||||| ||| Sbjct 215272 ATTTTAGCCTTAACATTTTCAATCGTATCCGAAGGTTCGACCTCAAGGGTGATGGTCTTG 215213 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCATTTTT 20212 || || || || || || || |||||||||||| Sbjct 215212 CCAGTTAAAGTCTTCACGAAGATTTGCATTTTT 215180 >seq1304 Length=336898 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 |||||||||| || ||||| ||||| |||||||| ||| || || | ||||||| Sbjct 274191 ACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATCTTCC 274250 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 |||||||| || || | || | | |||||||| ||| | ||||||||||| Sbjct 274251 AATTGTTTACCAGCGAAGATCAAACGTTGTTGATCTGGGGGGATACCTTCTTTGTCTTGG 274310 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 ||||| || || | ||| | ||| ||| || ||||| ||||||||| || Sbjct 274311 ATTTTGGCCTTGACATTTTCAATGGTGTCGGAAGGCTCAACTTCCAAGGTAATGGTCTTA 274370 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || || || |||||||| || || ||||| Sbjct 274371 CCAGTTAAAGTTTTGACGAAGATCTGCAT 274399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419578440199353