Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq869 178 1e-39 >seq869 Length=1271022 Score = 178 bits (196), Expect = 1e-39 Identities = 483/725 (67%), Gaps = 12/725 (2%) Strand=Plus/Minus Query 12968 AATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTC 13027 ||||| | | ||| | || || ||||| ||||| || | |||||| | ||| ||| Sbjct 484156 AATTCCACCAGCAAACGATCGGCCACAAATTCTATATATTCCGACATTAATTTACAATTC 484097 Query 13028 ATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCT 13087 || ||||| || || || |||| ||| ||||| | || | | ||| || | || ||| Sbjct 484096 ATGCCTATCAAATTGACGGGCAAAGCATCTGTAAGGAATTCCTGTTCAATTTTCACCGCT 484037 Query 13088 TCGATAACTATGTCTCTTATTACGTTCTCTAATGG-AGGATTTGATAGATGCTTAAACAT 13146 || | | || || | ||| | |||| | ||| | | | | | ||| |||||||| Sbjct 484036 TCAGTGATAATTTCAATAATT-CTCTCTCGACTGGGACGTTGTACCAAATGTTTAAACAT 483978 Query 13147 CA-TACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATG 13205 | |||| ||||||||||| || || || ||||| | ||| | ||| || || |||| Sbjct 483977 TAATACA-GCAAAATCACAATGTAAACCCTCATCACGTGATATCAACTCATTGGAGAATG 483919 Query 13206 TTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaa 13265 | ||||| |||||||| || ||||| || | |||||| || | |||||| || || Sbjct 483918 TAAGACCAGGCATAAGACCACGTTTCTTTAGCCAAAAGATGGAAGCAAAACTGCCACTAA 483859 Query 13266 aaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACC-ATACGTACT-ATTTTT 13323 | || || || || || || ||||| || || | | |||||| | | | || |||| Sbjct 483858 AGAAAATACCCTCTACAGCAGCAAAAGCAATAATACGTTCACCAAAATTTGCTGATTTCG 483799 Query 13324 ACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAAC-GCAGTTCATATTTTCTA 13382 | ||||| | ||||| | || || | ||||| || | |||| |||| | Sbjct 483798 A--AGAAATCCAAGCCATTGCCCAATCGGCCTTACGCTTAACAGCTG-GCATAGTTTCAA 483742 Query 13383 TTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGC 13442 | || ||||| | ||||| | | || || ||||||| |||| || | | | Sbjct 483741 TAGCATTAAAGAGATAATCACGCTGTTCACGATCCTTAATATAACTATCAATTAGAATAC 483682 Query 13443 TATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCT 13502 |||||||||| || || | ||||||||| || ||||| || ||||| ||||| | |||| Sbjct 483681 TATACATTTCAGAGTGTACATTTTCCATGGCAATTTGAAAGCCATAGAAACAGCGTGCCT 483622 Query 13503 CTGATACCTGAACTTC-GGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCA 13561 ||| || || ||||| ||| | || | ||| | | ||||| || || || || || Sbjct 483621 CTGTAACTTGTACTTCTTGAG-AGAAACGTTCGACAAGATTTTCATTGACAATGCCATCG 483563 Query 13562 CTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTT 13621 ||| || || |||||||| | || ||| || | || || || | | || Sbjct 483562 GAAGCGGCGAAGAAAGCAAGAACATGTGAAATGAAATGACGCTCATTGTCGGTGAGTCTT 483503 Query 13622 AACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACA 13681 ||| || | |||||| || | |||||| || || || |||||||||||||| | Sbjct 483502 TCCCAGTCGGAGTTATCTTTAGAAAGATCTACTTCTTCTACCGTCCAAAAAGAAGCTTCG 483443 Query 13682 GCCTT 13686 ||||| Sbjct 483442 GCCTT 483438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430973402299626