Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1190 174 4e-38 seq964 154 3e-32 seq1304 134 3e-26 seq482 96.9 8e-15 seq512 86.0 1e-11 >seq1190 Length=275307 Score = 174 bits (192), Expect = 4e-38 Identities = 161/204 (79%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || || |||||||| |||||||| || ||||| ||||| | || ||||| | |||| Sbjct 186875 TGCAAAGTGGATTCTTTTTGAATATTGTAATCAGAGAGAGTACGGCCATCTTCCAATTGT 186816 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 |||||||| ||||| | | |||||||| || || ||||||||||| ||||||||||| Sbjct 186815 TTTCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCCTGAATCTTG 186756 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||||| |||||||| | || ||| || || ||||| || || || |||||||| || Sbjct 186755 GCTTTGACATTTTCAATAGTGTCGGACGGCTCGACCTCAAGAGTGATGGTCTTACCCGTT 186696 Query 104537 AGTGTTTTTACAAATATCTGCATT 104560 || ||||| ||||| ||||||||| Sbjct 186695 AGGGTTTTGACAAAAATCTGCATT 186672 >seq964 Length=291957 Score = 154 bits (170), Expect = 3e-32 Identities = 154/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||||||||| ||||||||||| || || | ||| | |||||||| | |||||| || Sbjct 215380 GTAGATTCTTTTTGAATATTATAATCGGACAAAGTGCGTCCGTCTTCCAATTGTTTACCG 215321 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||||||||| | |||||||| || || || || || ||||| ||||| || || || Sbjct 215320 GCAAAAATTAGACGTTGTTGATCTGGGGGAATACCCTCCTTATCTTGAATTTTAGCCTTA 215261 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | ||||| |||||| ||||| || || || ||||| ||||| | || Sbjct 215260 ACATTTTCAATCGTATCCGAAGGTTCGACCTCAAGGGTGATGGTCTTGCCAGTTAAAGTC 215201 Query 104543 TTTACAAATATCTGCATTTT 104562 || || || || |||||||| Sbjct 215200 TTCACGAAGATTTGCATTTT 215181 Score = 154 bits (170), Expect = 3e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||| | ||| |||||||||||||| || |||||||| ||||| | || | |||||||| Sbjct 215621 TACCAAATGCAATGTAGATTCTTTTTGTATATTATAATCAGACAATGTGCGCCCGTCTTC 215562 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 | |||||| ||||||||||| | | |||||||| || || ||||||||||| || || Sbjct 215561 CAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGGATTCCTTCTTTGTCTTG 215502 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 ||| || ||||| |||||||| | ||||| ||| || || || | || || || || Sbjct 215501 AATTTTAGCTTTAACATTTTCAATAGTATCAGAAGGCTCAACTTCCAAAGTGATGGTTTT 215442 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | ||| || ||||| || ||||| Sbjct 215441 GCCAGTCAATGTCTTAACAAAGATTTGCAT 215412 Score = 152 bits (168), Expect = 1e-31 Identities = 152/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||||||||| ||||| ||||| || |||| ||| | || ||||| | ||||| ||| Sbjct 215836 GTAGATTCTTTTTGAATGTTATAATCGGATAAAGTGCGGCCATCTTCCAACTGTTTACCA 215777 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| | | ||||||||| || || || |||||||| || || || || ||||| Sbjct 215776 GCGAAAATCAAACGCTGTTGATCTGGGGGAATACCTTCTTTGTCTTGGATTTTAGCTTTA 215717 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||||| ||||| |||||| ||||| | |||||| || ||||| || | |||| Sbjct 215716 ACATTTTCTATAGTATCCGAAGGTTCAACCTCCAATGTAATTGTTTTACCCGTTAATGTT 215657 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 215656 TTAACGAAAATTTGCAT 215640 >seq1304 Length=336898 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 ||||| | |||||| || ||||| || || || || ||||| || | || | ||| ||| Sbjct 274188 AGTACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATCT 274247 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || | |||||| ||||| || || | | |||||||| || || || |||||||| || Sbjct 274248 TCCAATTGTTTACCAGCGAAGATCAAACGTTGTTGATCTGGGGGGATACCTTCTTTGTCT 274307 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || || || || || |||||||| | ||| ||| ||| || || || | ||||| ||| Sbjct 274308 TGGATTTTGGCCTTGACATTTTCAATGGTGTCGGAAGGCTCAACTTCCAAGGTAATGGTC 274367 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| | ||||| || || |||||||| Sbjct 274368 TTACCAGTTAAAGTTTTGACGAAGATCTGCAT 274399 >seq482 Length=721836 Score = 96.9 bits (106), Expect = 8e-15 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 104364 TAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAG 104423 ||||||| ||| |||||||||||||| | | | | ||| |||| | |||||| || | Sbjct 18914 TAGATTCATTCACGATATTATAGTCAGACAAATTCCGACCACCTTCCAATTGTTTACCGG 18855 Query 104424 CAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTA 104483 |||| || | | |||| ||| ||||| || ||||| |||||||| ||||| || || | Sbjct 18854 CAAAGATCAAACGTTGTTAATCTGGAGGAATACCTTCCTTATCCTGGATCTTAGCCTTAA 18795 Query 104484 CATTTTCTACGGTATCGCTAGGTTCTACCTC 104514 | |||| | | ||||| ||||| ||| || Sbjct 18794 CGTTTTAGATGATATCGGAAGGTTATACTTC 18764 >seq512 Length=1289179 Score = 86.0 bits (94), Expect = 1e-11 Identities = 129/180 (72%), Gaps = 4/180 (2%) Strand=Plus/Minus Query 165258 GAGCGTGGAATATTAATAAACCTTTACTTTTCTGTCCAGCTATGAATACACTTATGTGGG 165317 |||| ||| || | | ||||||||||| ||||||||||| |||||||||| ||||| | Sbjct 754717 GAGCCTGGGATGTCAGCAAACCTTTACTATTCTGTCCAGCCATGAATACACGTATGTTTG 754658 Query 165318 AACATCCTATTACTGAGCAGCATATAGAAACTCTTAAGCATATGGGGT--ACATAGAAGT 165375 ||||||| ||||| || | |||||| || | ||| | ||||||| ||| ||||| Sbjct 754657 AACATCCCATTACCCAGGAACATATAACAAAAC-TAAAAACATGGGGTTATCAT-GAAGT 754600 Query 165376 TGAGTGTATTGAGAAAAAGCTAGCTTGTGGTGATATTGGAAAAGGTGCCATGGCAGAAGT 165435 || | ||||| || ||||| |||| || || || || ||||| ||||| Sbjct 754599 ACCAACAATAGCGAAAACTTTAATGTGTGGCGATACGGGTAACGGAGCTATGGCCGAAGT 754540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151373129323804