Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq165 538 2e-148 seq87 91.5 9e-14 >seq165 Length=448888 Score = 538 bits (596), Expect = 2e-148 Identities = 914/1308 (70%), Gaps = 20/1308 (2%) Strand=Plus/Minus Query 71337 GCAGAACAAGCTGTACTTGGTGGCTTAATGCTTGATAACTGCCGCTGGGATGAAGTTGCA 71396 || ||||| ||||| | || || || ||| | |||||| ||||||||| ||| | Sbjct 63102 GCGGAACAGTCTGTATTGGGGGGGTTGATGTTGGATAACGAACGCTGGGATACCGTTTCT 63043 Query 71397 GATCGTATAGTTGCTGATGATTTTTATACCAGTGCTCATCGTGAAATTTTCAGTGAGATG 71456 || ||| | || |||||||||| | || | || || ||||| | | ||| Sbjct 63042 GAGCGTGTGACCCATGCCGATTTTTATAGCCGTCCACACCGCACTATTTTTGCTCAAATG 62983 Query 71457 GAGAGGTTA-TTAAGTCATGGCAAACCGATTGATTTGATAACACTTGCTGAAGCACTTGA 71515 ||| ||| || || || |||||||| || |||||||| ||| | ||||| | ||||| Sbjct 62982 CAGACTTTACTTGAG-CAAGGCAAACCTATCGATTTGATCACATTATCTGAATCTCTTGA 62924 Query 71516 ACAGAACGGTAAATTAGAACGCGCCGGTGGTTTTGCGTACCTTGCGGAGATGTCAAAGAA 71575 |||| | ||| ||||||| | | || || ||||| || || || || | || || || Sbjct 62923 ACAGCAAGGTGAATTAGATGGTGTTGGCGGGTTTGCTTATCTCGCTGAATTATCTAAAAA 62864 Query 71576 CACGCCCAGCTCGGCAAATATTTGTGCTTATGCGGATATCGTTCGTGAACGCGCGGTTGT 71635 ||||| || ||||||| || |||||||| |||||||| |||||||| || ||||| Sbjct 62863 TACGCCAAGTGCGGCAAACATCAACGCTTATGCAGATATCGTCCGTGAACGTGCAGTTGT 62804 Query 71636 TCGTGAAATGATTTCCGTCGCAAATGAAATAGCCGAAGCTGGATATG---CGCAGGATGG 71692 ||||| ||||| || || || |||||||| ||||| || ||||||| |||||| || Sbjct 62803 GCGTGATATGATCTCTGTTGCCAATGAAATTGCCGATGCAGGATATGATCCGCAGG--GG 62746 Query 71693 CAGGGGCAGCAATGAATTGCTGGATATGGCCGAGCGCCGCGTTTTTGAAATAGCTGAAAA 71752 | | | || | || |||| ||| | || || || || |||| || ||| Sbjct 62745 C-GTAGTAGTGAGGATCTGCTCGATTTTGCGGAAACAAAAGTCTTCCAAATTGCCGAATC 62687 Query 71753 ACGA-CAAA-AGAGCGGTAGTGGTCCAAAAGATATCGCCAGCATTCTCGATGCAACGGTA 71810 || |||| | || | || | ||||||||||| | |||| | | | ||| || Sbjct 62686 GCGCGCAAATAAAGACGAAG--GCCCAAAAGATATTGAAGCCATTTTGGCCGAAAC--TA 62631 Query 71811 TCTCGCATA--GAAGAGTTGTTTCAGCGACCACATGATGGTGTAACGGGGCTTGATACGG 71868 || | | ||| || | | || | ||| |||||||| || || ||| | || | Sbjct 62630 TCGAAAAAATCGAAAAGCTCTACCAACAACCTCATGATGGGGTGACAGGGGTATCGACTG 62571 Query 71869 GATTTACCGATCTCAATAAGAAGACGGCAGGGCTTCAGCCGTCCGATCTCATCATTGTCG 71928 | | | |||||| ||||||| || || || || || || || | || ||||| | Sbjct 62570 GTTATCAAGATCTCGATAAGAAAACCGCTGGCCTGCAAGGTTCGGACTTAATTATTGTTG 62511 Query 71929 CCGCCCGCCCATCTATGGGGAAGACCACGTTTGCGATGAATCTCGTC-GAAAATGCCGCA 71987 | || || ||||| |||||||| ||||| ||||||||||| || || ||||| || || Sbjct 62510 CGGCTCGTCCATCAATGGGGAAAACCACTTTTGCGATGAA-CTTGTGTGAAAACGCGGCC 62452 Query 71988 GTTCGTAACGATAAGCCCGTATTGGTTTTTAGCCTTGAGATGCCGAGCCACCAGCTGATG 72047 | | || || ||||| | |||| || | |||||||| | |||| | ||| Sbjct 62451 ATGACAGAAGAAAAACCCGTGCTTATTTTCAGTTTGGAGATGCCCGGTAACCAAATCATG 62392 Query 72048 ATGCGCTCACTGGCTTCTCTTGCACGCGTTGATCAGACTCGTATTCGGACAGGGCAACTT 72107 ||||| | || ||| | |||| || || || ||||||||||| || || || | Sbjct 62391 ATGCGTATGTTAGCGTCTTTATCACGTGTAGACCAAACTCGTATTCGTACTGGTCAGTTA 62332 Query 72108 AACGACGAGGATTGGGCGCGGGTTTCTGGCGCAATGGGTATTCTGTTGGACAAGCAGAAT 72167 | || |||||||||||||| |||| || | ||||| || || | || || | || Sbjct 62331 GATGATGAGGATTGGGCGCGTATTTCGAGCACCATGGGGATCCTTTCTGAAAAACGTAAC 62272 Query 72168 ATTTTTATTGATGACTCAAGCGCCCTGACGCCGACAGAGCTACGTTCCCGCGCTCGTCGT 72227 || | |||||||||||| | |||| || ||||| | |||||||| || || ||| Sbjct 62271 ATGTATATTGATGACTCTTCGGGGTTGACCCCTACAGAAGTGCGTTCCCGTGCCCGACGT 62212 Query 72228 GTTTATAAAGAAAATGGTGGTTTGAGCATGATTATGATCGACTACCTGCAACTTATGCGC 72287 ||||| || |||||||||| || | |||||||| |||||| |||| | ||| | Sbjct 62211 ATTTATCGTGAGCATGGTGGTTTAAGTCTTATTATGATTGACTACTTGCAGTTGATGAGA 62152 Query 72288 GTCCCCGAGCTGCAAGATAACCGAACGCTGGAAATTGCCGAGATTTCTCGCTCACTGAAG 72347 || || | | |||||||| || | |||||||| || ||||| |||||| |||| Sbjct 62151 GTACCGGCTTTATCTGATAACCGTACTTTAGAAATTGCAGAAATTTCACGCTCATTGAAA 62092 Query 72348 GCGTTGGCGAAGGAATTACAAGTACCGGTGGTGGCATTGTCACAACTTAATCGATCGCTT 72407 || ||||| || || || | || ||||| || || |||||||| ||||| ||| |||| Sbjct 62091 GCATTGGCAAAAGAGTTGAATGTTCCGGTCGTTGCTTTGTCACAGCTTAACCGAA-GCTT 62033 Query 72408 -GAACAGCGTGCGGACAAACGACCGGTAAATTCAGATTTACGTGAATCAGGAGCAATTGA 72466 || |||||||| || ||||| || || || || || |||||||||||||| | || || Sbjct 62032 AGAGCAGCGTGCAGATAAACGCCCTGTGAACTCTGACTTACGTGAATCAGGCTCTATCGA 61973 Query 72467 GCAGGACGCAGACCTGATTATGTTTCTGTATCGCGACGAAGTTTATCACCCGGATAGCGA 72526 |||||| || ||||| ||||||||| | ||||| || || ||||||||| |||| || Sbjct 61972 GCAGGATGCTGACCTTATTATGTTTATTTATCGTGATGAGGTTTATCACGATAATAGTGA 61913 Query 72527 AATGAAGGGCATTGCCGAGGTAATTATCGGAAAGCAACGAAATGGCCCAATTGGCACGGT 72586 | |||| || |||| || | ||| | || |||||||| ||||| |||||||| ||||| Sbjct 61912 ATTGAAAGGGGTTGCTGAAATTATTTTAGGTAAGCAACGTAATGGTCCAATTGGTACGGT 61853 Query 72587 GAGATTGGCTTTTAACGGCCAATACTCACGGTTTGATAACTATGCCGG 72634 || || | ||||| || |||| || ||||||||||| ||||| || Sbjct 61852 TCGACTGACATTTAATGGTCAATGGTCGCGGTTTGATAATTATGCGGG 61805 >seq87 Length=489008 Score = 91.5 bits (100), Expect = 9e-14 Identities = 70/82 (85%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 70933 GGCCCTTTAGCTCAGT-GGTTAGAGCTGGCGACTCATAATCGCACGGTCACCGGTTCAAG 70991 ||||| |||||||||| ||||||||| | ||||||||||||| |||| | |||||||| Sbjct 311483 GGCCCCTTAGCTCAGTTGGTTAGAGCAGTCGACTCATAATCGATTGGTCGCTGGTTCAAG 311542 Query 70992 TCCGGTAGGGGCCACCATATTT 71013 ||| | ||||||||||| |||| Sbjct 311543 TCCAGCAGGGGCCACCAAATTT 311564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 303228869301873