Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq1303 170 2e-37 seq767 152 6e-32 seq168 93.3 5e-14 >seq1303 Length=344040 Score = 170 bits (188), Expect = 2e-37 Identities = 475/716 (66%), Gaps = 22/716 (3%) Strand=Plus/Plus Query 6699 TGGATGAGGATTATAATCTAACAATTCAAAATCTTCAAATTTAAAATCACATAAATTATC 6758 ||||| ||| ||||| | | | |||||||||||||||||| ||||| || || | Sbjct 95731 TGGATAAGGTTTATAGCCGACAATTTCAAAATCTTCAAATTTGAAATCCTCTATATCCTT 95790 Query 6759 AGACtttttttttAATATTACAAC--AGGTGAAGGTTTTATTGATCGAGTTAATTGTTCT 6816 | |||| ||| ||| ||| ||| |||| | | || | |||||||| Sbjct 95791 A-ACTTCACGTTTTATAAG-CAATTTAGGGAAAGGACGTGGTTTACGTTTCAATTGTTCC 95848 Query 6817 TTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAATAAATTCA 6876 || | || || ||||||| ||||| ||||| ||| || ||||||||||| || Sbjct 95849 TTCAAAGGTTCAATATGATTCTTATAAACATGAGTATCACCAGTGGTATGAATAAAATCT 95908 Query 6877 CCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAGAAGCTACA 6936 |||||||||| | | | |||||||| | |||||||| ||| ||||| ||||||| | Sbjct 95909 CCTGGTTTCAAACCGGTAATATGAGCAATCATATATGTTAGTAAAGCATATGAAGCTATA 95968 Query 6937 TTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTGACAAGATA---AA 6993 ||||| |||||||| | ||||| || || | ||| || | || || |||| | Sbjct 95969 TTAAATGGTACACCCAGACCCATGTCAGCGCTGCGTTGGTACAACTGGCATGATAGTTCA 96028 Query 6994 ATATTGTCTATAGCATAAAATTGACACAATACATGACATGGAGGTAAAACAGCCTGATCT 7053 ||| | | |||| ||||| ||| |||||| || || ||| | || | Sbjct 96029 CCATTTGCCA---CATAGAATTGTGCCAAACAATGACAGGGCGGCAAAGCCATTTGTGGT 96085 Query 7054 ATATC-AGATGGATTCCAAGCAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAA 7112 ||||| ||| |||||||| || | ||| | |||||||| |||||| ||||| || || Sbjct 96086 ATATCGAGA-GGATTCCAGGCTGACATAATAATACGTCGATCATTGGGATTAGTACGTAT 96144 Query 7113 TTTTGTTATAATTATTTGTAATTGATCTATACCCTGACCTTCATAATTAGTATGACAATT 7172 | | | || | | | ||||| | ||||| | |||| | || ||| | Sbjct 96145 TGTATTGATGACCTCCTTCAGCTGATCCACACCCTCATTGGAGTAATCATCGTGGCAAGT 96204 Query 7173 TATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTC 7232 ||| || || |||||||| | |||||| || ||||| | |||||| |||||||| || Sbjct 96205 GCGATATTTGGCACCAAAATGACGCCATTGGAAACCATACACAGGACCCAAATCACCCTC 96264 Query 7233 TTCACGATGATTAAATCCTAATCGATTTAAATTAGATTTT--GAT--CCATAAGCATCCC 7288 ||| || | |||| |||| ||||| ||| ||| ||| | || | |||||| Sbjct 96265 TTCGCGTTCGGTAAAACCTA----ATTTATCCAAGAATTTACGATCACTATTACCATCCC 96320 Query 7289 AAATATGTA-CAGAtttttttGATAAATTTAAAGAATTTGTAGATCCTTTAAGGAACCAT 7347 |||| |||| || | ||| | |||| | || || | || | | ||||| Sbjct 96321 AAATGTGTATGTTCTTCTCTTGCAATATTT-TGGCATCGGTGCAACCATGTACAAACCAC 96379 Query 7348 AAAAGTTCTTCTACTATTCCACGCCAAAACATTCTTTTTGTAGTGAATAAAGGGAA 7403 || |||||||| | | |||||||||| | || |||||| || || || || || Sbjct 96380 AATAGTTCTTCGGCCACCGCACGCCAAAATACTCGTTTTGTGGTTAACAATGGAAA 96435 >seq767 Length=1660825 Score = 152 bits (168), Expect = 6e-32 Identities = 267/389 (69%), Gaps = 20/389 (5%) Strand=Plus/Minus Query 164729 TTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGGT---------GATAATA 164779 |||| | |||||||| || ||||| |||| ||| |||||||| | ||||| Sbjct 520051 TTATCATCTTTGATGAAATCGATGCCATTTGTAAACAACGTGGTTCTGTGGCCGGTAATA 519992 Query 164780 TTATT---CATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCT 164836 | | || ||| | ||||| ||||| ||| | | ||||| |||||||| ||| | Sbjct 519991 GTGGTGTCCACGATACTGTGGTAAATCAATTGTTGGCCAAAATCGATGGTGTTGAACAAT 519932 Query 164837 TAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTAT 164896 ||||||| |||||| || | |||||||| || || | |||| | |||||||| || |||| Sbjct 519931 TAAATAACATTTTAGTTATTGGTATGACTAATCGTCGTGATATGATTGATGACGCCTTAT 519872 Query 164897 TACGACCTGGTCGATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCC 164956 | || || ||||| || ||| | |||| ||||| | |||||| | || | || || Sbjct 519871 TGCGTCCCGGTCGTTTGGAAGTACAAATGGAAATTAGTTTACCCAATGAACAGGGTCGTG 519812 Query 164957 TTCAAATTTTAAAAGTTCA----TGTGGCTAAAATGAAATCCTGTGATATATTATCTCCC 165012 | ||||||||||| |||| || |||| || ||| | | | ||| Sbjct 519811 TGCAAATTTTAAATATTCACACCAAGCGCATGCGTGAATTC----AATAAAATCGCCCCC 519756 Query 165013 GATGTAGATTTAAATAAAATAGCTGCCGAAACTAAAAATTATAGTGGTGCTGAATTAGAG 165072 |||||||||| || | || ||||| |||||||| | |||||| ||||| || || Sbjct 519755 GATGTAGATTGCAAAGAGATTGCTGCTCTTACTAAAAACTTTAGTGGAGCTGAGTTGGAA 519696 Query 165073 GGATTAGTAAGAGCCGCTCAATCAACCGC 165101 || || ||| | || ||||| || || || Sbjct 519695 GGTTTGGTACGTGCTGCTCAGTCTACAGC 519667 Score = 105 bits (116), Expect = 8e-18 Identities = 208/305 (68%), Gaps = 6/305 (2%) Strand=Plus/Minus Query 164393 ATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCA 164452 ||||| |||| | ||||||| | || || | ||| ||||| | || || | Sbjct 520452 ATTGGGATTTCGGTAAAATGGGTATTGGCGGTTTGGATAAGGAATTCAATGCCATCTTTA 520393 Query 164453 GACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAAC 164512 || |||||||||||||| || |||| || | || || | || ||||| || | Sbjct 520392 GAAGAGCATTTGCTTCTCGAGTCTTTCCACCAGAGTTGGTAGAACAGTTGGGCTGCAAGC 520333 Query 164513 ATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGAT 164572 | |||| || ||||||||| |||| || || ||| |||||||| || |||||||| Sbjct 520332 ACGTAAAGGGTATTTTATTATATGGTCCACCCGGTACTGGTAAAACTTTGATGGCTCGTC 520273 Query 164573 GCATTGCTCAAGCTTTTAAAT---CGCGACCCGTTAAAATTGTTAATGGTCCTGAATTAT 164629 |||| ||| | |||||| | || || ||| |||||||||||||| | | | Sbjct 520272 AAATTG-GCAATATGTTAAATGCCAGAGAGCC--TAAGATTGTTAATGGTCCACAGATTT 520216 Query 164630 TGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAG 164689 || | |||||||| ||||| |||||||| || || | |||||| || ||||| | Sbjct 520215 TGGATAAATATGTGGGTGAATCAGAAGCCAACATTCGTCGTTTGTTTGCCGAAGCTGAGG 520156 Query 164690 AAGAA 164694 | ||| Sbjct 520155 AGGAA 520151 >seq168 Length=1485889 Score = 93.3 bits (102), Expect = 5e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 19355 ATACCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGTATG 19414 ||||| |||| ||||| |||||||||||| | | |||||| || || |||||||| Sbjct 427713 ATACCGCAAATTGGTGACAAGTTTGCTTCTCGTCACGGTCAAAAGGGTACTTGTGGTATT 427772 Query 19415 ATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTATTATT 19474 ||||||||||| || ||| | ||||| || ||| ||| || ||| |||||||| Sbjct 427773 CAGTATCGTCAAGAGGACATGGCATTTACGTGTGAAGGTTTAGCTCCTGATATTATTATT 427832 Query 19475 AACCCACATGCTTTTCCAAGTCGAATGAC 19503 || || || ||| |||| ||| ||||| Sbjct 427833 AATCCTCACGCTATTCCCTCTCGTATGAC 427861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595859240890800