Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq1619 127 1e-24 seq175 127 1e-24 seq513 123 1e-23 seq1303 116 2e-21 seq421 113 2e-20 >seq1619 Length=3001179 Score = 127 bits (140), Expect = 1e-24 Identities = 91/103 (88%), Gaps = 2/103 (2%) Strand=Plus/Minus Query 11430 AATATAGAATTAATAAAAAA-TCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487 ||| || ||||||||||||| | || |||||||||| |||||||||| |||||||| Sbjct 1830177 AATGTAAAATTAATAAAAAAGTGGTATGTGGCCCATGAGGGGATCGAACCCGCGACCTTC 1830118 Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1830117 GCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCG 1830075 Score = 127 bits (140), Expect = 1e-24 Identities = 85/94 (90%), Gaps = 1/94 (1%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATT 11495 ||||||||||||| ||| |||||||||| |||||||||| |||||||||||||||| Sbjct 1830968 AATTAATAAAAAAAGAAACCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATT 1830909 Query 11496 AGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||| |||||||||||||||||||| Sbjct 1830908 AGCACGACGCTCTAACCAACTGAGCTAATGGGCC 1830875 Score = 120 bits (132), Expect = 2e-22 Identities = 87/100 (87%), Gaps = 1/100 (1%) Strand=Plus/Minus Query 11431 ATATAGAATTAATAAAAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGC 11489 |||| ||| || ||||| ||| ||||||||||| |||||||||| |||||||||| Sbjct 1829324 ATATTAAATAAAACAAAAAACAATATTGGCCCATGGGGGGATCGAACCCGCGACCTTCGC 1829265 Query 11490 GTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||| |||||||||||||||||||| Sbjct 1829264 GTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 1829225 >seq175 Length=1650005 Score = 127 bits (140), Expect = 1e-24 Identities = 81/89 (91%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| ||| ||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 442145 AAAAAAGCAATTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 442086 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCGTC 11532 ||||| |||||||||||||||||||| || Sbjct 442085 GCTCTAACCAACTGAGCTAATGGGCCATC 442057 Score = 127 bits (140), Expect = 1e-24 Identities = 80/86 (93%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 453202 AAAAAATCAA-TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 453144 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 453143 GCTCTAACCAACTGAGCTAATGGGCC 453118 Score = 123 bits (136), Expect = 1e-23 Identities = 81/90 (90%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 11440 TAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 ||| |||||| ||||||||||||| |||||||||| |||||||||||||||||||| Sbjct 453772 TAACAAAAAACATAATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCA 453713 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| |||||||||||||||||||| Sbjct 453712 CGACGCTCTAACCAACTGAGCTAATGGGCC 453683 Score = 123 bits (136), Expect = 1e-23 Identities = 81/89 (91%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 11446 AAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| || |||||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 463256 AAAATAAACATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACG 463315 Query 11505 CTCTRACCAACTGAGCTAATGGGCCGTCG 11533 |||| ||||||||||||||||||||| || Sbjct 463316 CTCTAACCAACTGAGCTAATGGGCCGACG 463344 Score = 122 bits (134), Expect = 5e-23 Identities = 81/91 (89%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 11439 TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 |||| ||||| ||||||||||||| |||||||||| ||||||||||||||||||| Sbjct 450686 TTAAAAAAAAGAACAATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGC 450627 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| |||||||||||||||||||| Sbjct 450626 ACGACGCTCTAACCAACTGAGCTAATGGGCC 450596 Score = 122 bits (134), Expect = 5e-23 Identities = 82/91 (90%), Gaps = 1/91 (1%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||| || |||||||||||||| ||| |||||| |||||||||||||||||||||||| Sbjct 451055 AAAATAT-AAATTGGCCCATGAGGGGACCGAACCCGCGACCTTCGCGTTATTAGCACGAC 451113 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCGTCGA 11534 ||||| ||||||||||||||||||||| ||| Sbjct 451114 GCTCTAACCAACTGAGCTAATGGGCCGGCGA 451144 Score = 120 bits (132), Expect = 2e-22 Identities = 79/87 (91%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 11444 AAAAAATCAAATT-GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||||| |||| ||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 443839 AAAAAATGTAATTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGA 443780 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||||||||||||||||||| Sbjct 443779 CGCTCTAACCAACTGAGCTAATGGGCC 443753 Score = 120 bits (132), Expect = 2e-22 Identities = 79/87 (91%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||| ||||| |||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 445072 AAAAGATCAA--TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 445129 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||| ||||||||||||||||||||| Sbjct 445130 GCTCTAACCAACTGAGCTAATGGGCCG 445156 Score = 120 bits (132), Expect = 2e-22 Identities = 85/97 (88%), Gaps = 2/97 (2%) Strand=Plus/Plus Query 11433 ATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTT 11492 ||||||| || ||||| | ||||||||||| |||||||||| ||||||||||||| Sbjct 451521 ATAGAAT--ATGAAAAAGATATTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTT 451578 Query 11493 ATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||| |||||||||||||||||||| Sbjct 451579 ATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 451615 Score = 118 bits (130), Expect = 6e-22 Identities = 78/86 (91%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| || | ||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 391128 AAAAAATTAACT-GGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 391186 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 391187 GCTCTAACCAACTGAGCTAATGGGCC 391212 Score = 118 bits (130), Expect = 6e-22 Identities = 81/91 (89%), Gaps = 1/91 (1%) Strand=Plus/Minus Query 11440 TAATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 ||| ||||| | ||| |||||||||| |||||||||| ||||||||||||||||||| Sbjct 441321 TAACAAAAAGTTGAATGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGC 441262 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| |||||||||||||||||||| Sbjct 441261 ACGACGCTCTAACCAACTGAGCTAATGGGCC 441231 Score = 118 bits (130), Expect = 6e-22 Identities = 87/101 (86%), Gaps = 1/101 (1%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 || |||| |||||| | | | ||| |||||||||| |||||||||| ||||||||| Sbjct 448390 AATTATATAATTAAAACATTAA-AAACTGGCCCATGAGGGGATCGAACCCGCGACCTTCG 448332 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| |||||||||||||||||||| Sbjct 448331 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 448291 Score = 116 bits (128), Expect = 2e-21 Identities = 80/91 (88%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 11439 TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 ||| |||||| || |||||||||| |||||||||| ||||||||||||||||||| Sbjct 444655 TTATTAAAAAGTCTTTATGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGC 444596 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| |||||||||||||||||||| Sbjct 444595 ACGACGCTCTAACCAACTGAGCTAATGGGCC 444565 Score = 116 bits (128), Expect = 2e-21 Identities = 72/78 (92%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || ||||||||||| |||||||||| ||||||||||||||||||||||||||||| || Sbjct 449020 AATTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 448961 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 448960 CAACTGAGCTAATGGGCC 448943 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 442976 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 442917 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 442916 CTGAGCTAATGGGCC 442902 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 446849 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 446908 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 446909 TGAGCTAATGGGCCG 446923 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 449694 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 449635 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 449634 CTGAGCTAATGGGCC 449620 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 450800 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 450859 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 450860 CTGAGCTAATGGGCC 450874 >seq513 Length=1027920 Score = 123 bits (136), Expect = 1e-23 Identities = 83/92 (90%), Gaps = 1/92 (1%) Strand=Plus/Minus Query 11439 TTAATAAAAAA-TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 ||||||||||| ||| ||||||||||| |||||||||| || ||||||||||||||| Sbjct 523689 TTAATAAAAAAATCACATTGGCCCATGGGGGGATCGAACCCGCGGCCTTCGCGTTATTAG 523630 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||| |||||||||||||||||||| Sbjct 523629 CACGACGCTCTAACCAACTGAGCTAATGGGCC 523598 Score = 118 bits (130), Expect = 6e-22 Identities = 72/77 (94%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 ||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 522042 AATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 521983 Query 11513 AACTGAGCTAATGGGCC 11529 ||||||||||||||||| Sbjct 521982 AACTGAGCTAATGGGCC 521966 >seq1303 Length=344040 Score = 116 bits (128), Expect = 2e-21 Identities = 71/76 (93%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 |||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 186274 ATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCA 186333 Query 11514 ACTGAGCTAATGGGCC 11529 |||||||||||||||| Sbjct 186334 ACTGAGCTAATGGGCC 186349 >seq421 Length=1432652 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 65693 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 65752 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 65753 TGAGCTAATGGGCC 65766 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261485740799188