Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1190 131 2e-25 seq964 120 3e-22 seq1304 116 3e-21 >seq1190 Length=275307 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||| |||||||||||||| ||||| ||||| | || ||||| | ||| | | Sbjct 186887 CGCAATACCAAGTGCAAAGTGGATTCTTTTTGAATATTGTAATCAGAGAGAGTACGGCCA 186828 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| |||||||| | || || || | ||| |||||||| ||||| ||||||||| Sbjct 186827 TCTTCCAATTGTTTTCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATTCCTTCTTTG 186768 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| || || ||||| | | |||||| | | ||||| |||| |||||| Sbjct 186767 TCCTGAATCTTGGCTTTGACATTTTCAATAGTGTCGGACGGCTCGACCTCAAGAGTGATG 186708 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || ||||| ||||| |||||||| Sbjct 186707 GTCTTACCCGTTAGGGTTTTGACAAAAATCTGCAT 186673 >seq964 Length=291957 Score = 120 bits (132), Expect = 3e-22 Identities = 171/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || || | ||| || || ||||| ||||| |||||||| ||||| | Sbjct 215650 AAAATTTGCATGCCACCACGCAAACGTAATACCAAATGCAATGTAGATTCTTTTTGTATA 215591 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 |||||||| || ||| || |||| ||||| || |||| || || | ||| Sbjct 215590 TTATAATCAGACAATGTGCGCCCGTCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGT 215531 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 |||||||| || || ||||||||||| | |||||| || || || | | ||| ||| Sbjct 215530 TGATCTGGTGGGATTCCTTCTTTGTCTTGAATTTTAGCTTTAACATTTTCAATAGTATCA 215471 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 | | || || || | ||||||||||| ||||| | || || |||||||| |||||| Sbjct 215470 GAAGGCTCAACTTCCAAAGTGATGGTTTTGCCAGTCAATGTCTTAACAAAGATTTGCATG 215411 Query 95009 C 95009 | Sbjct 215410 C 215410 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||| || || || | |||||||||||| || | ||| ||||| | ||| | Sbjct 216869 CGCAATACTAAATGGAGAGTAGATTCCTTCTGGATGTTGTAATCCGAAAGGGTGCGTCCA 216810 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| ||||| ||| ||||||| || | ||| || ||||| ||||||||||| || Sbjct 216809 TCTTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGGTCTGGGGGAATACCTTCCTTA 216750 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||||||| | | || || | | || || || | |||||| Sbjct 216749 TCTTGGATCTTAGCCTTGACGTTTTCAATGGTATCGGAAGGTTCAACTTCCAAAGTGATG 216690 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||||| || | ||||||||| ||||||||||| Sbjct 216689 GTTTTTCCGGTCAAAGTTTTCACGAAGATCTGCAT 216655 Score = 114 bits (126), Expect = 1e-20 Identities = 170/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || || | ||| ||||| |||||||| | |||||||| ||||| | | Sbjct 215878 AAAATTTGCATACCACCACGCAAACGCAATACCAAGTGAAGGGTAGATTCTTTTTGAATG 215819 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 ||||||||| | |||| | ||| |||| |||||| || | || || || | || Sbjct 215818 TTATAATCGGATAAAGTGCGGCCATCTTCCAACTGTTTACCAGCGAAAATCAAACGCTGT 215759 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 |||||||| ||||||||||||||||| | ||||| || || || | | ||| || Sbjct 215758 TGATCTGGGGGAATACCTTCTTTGTCTTGGATTTTAGCTTTAACATTTTCTATAGTATCC 215699 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 | | || || || | || || ||||| || || | ||||| || || || |||||| Sbjct 215698 GAAGGTTCAACCTCCAATGTAATTGTTTTACCCGTTAATGTTTTAACGAAAATTTGCATG 215639 Query 95009 C 95009 | Sbjct 215638 C 215638 Score = 102 bits (112), Expect = 7e-17 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCC 94855 |||||| || | || || |||||||| | ||| || || || || || || ||| Sbjct 217092 CACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACA-AG-GTACGACCATCT 217035 Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 ||||| ||||| ||| | ||||| || | |||||||||||| ||||||||||| || || Sbjct 217034 TCCAGTTGTTTACCGGCGAAGATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTATCC 216975 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTT 94975 | ||||| ||||| ||| | | || || | | ||||| || | ||||||||| Sbjct 216974 TGGATTTTAGCCTTTACGTTCTCAATGGTATCGGAAGGTTCGACTTCCAAAGTGATGGTT 216915 Query 94976 TTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || | ||||| || ||||| ||||| Sbjct 216914 TTGCCGGTCAAGGTTTTAACGAAGATTTGCAT 216883 >seq1304 Length=336898 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| || ||||| ||||||||||| | ||| || ||| || ||| ||| ||| Sbjct 274191 ACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATCTTCC 274250 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | ||||| || | ||||| || | ||| |||||||| || |||||||||||||| | Sbjct 274251 AATTGTTTACCAGCGAAGATCAAACGTTGTTGATCTGGGGGGATACCTTCTTTGTCTTGG 274310 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 ||||| |||||||| | | ||||| | | || || || | || ||||| || Sbjct 274311 ATTTTGGCCTTGACATTTTCAATGGTGTCGGAAGGCTCAACTTCCAAGGTAATGGTCTTA 274370 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| | |||||| || ||||||||||| Sbjct 274371 CCAGTTAAAGTTTTGACGAAGATCTGCAT 274399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448281600964680