Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq600 118 2e-22 seq479 84.2 3e-12 seq159 80.6 4e-11 >seq600 Length=827744 Score = 118 bits (130), Expect = 2e-22 Identities = 107/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | ||||| ||||||||||| || || ||||||||||| || Sbjct 332965 GCCAAGCGTCATCGTAAGGTACTTCGTGATAACATCCAGGGTATTACCAAGCCAGCCATT 333024 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || ||||||||||| || |||||| | || || || |||||||||| | | Sbjct 333025 CGTCGTCTAGCCCGTCGTGGTGGTGTAAAGCGTATATCGGGTTTAATCTATGAAGAAACT 333084 Query 16553 CGTGATGTTTTGAAG 16567 |||| ||| || ||| Sbjct 333085 CGTGGTGTATTAAAG 333099 Score = 114 bits (126), Expect = 2e-21 Identities = 96/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 16582 CGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCAT 16641 ||| || | ||||||| | ||||||||| || ||||||||||| ||||| ||| |||| Sbjct 333218 CGTCATTCGTGATGCTGTTACCTATACCGAACATGCTAAACGTAAAACTGTTACCGCCAT 333277 Query 16642 GGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| |||||||||| |||||||||||||| |||| | || |||||||| ||||| Sbjct 333278 GGATGTCGTCTATGCTTTGAAACGTCAAGGTCGTACTTTGTACGGTTTTGGTGGTTAA 333335 >seq479 Length=454133 Score = 84.2 bits (92), Expect = 3e-12 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||| |||||| | | | | || ||||| || ||||| || ||||||| |||||| Sbjct 180463 GCTAAACGTCATGGTAAAATGTTGCGTGATAATATACAAGGTATTACCAAGCTAGCTATT 180404 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | ||| |||||||||||||||| || || ||| | ||||| || | || ||||| | | Sbjct 180403 AGACGTTTGGCTCGTCGTGGTGGTGTAAAACGTATTTCTGGTTTAATTTACGAAGAAACT 180344 Query 16553 CGTG 16556 |||| Sbjct 180343 CGTG 180340 >seq159 Length=19881 Score = 80.6 bits (88), Expect = 4e-11 Identities = 92/124 (74%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||| ||| |||| | | | || ||||| || ||||| || ||||||| |||||| Sbjct 10336 GCTAAACGTTATCGTAAAGTGTTGCGTGATAATATACAAGGTATTACCAAGCTAGCTATT 10395 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | ||| |||||||||||||||| || || ||| | ||||| || | || | ||| | | Sbjct 10396 AGACGTTTGGCTCGTCGTGGTGGTGTAAAACGTATTTCTGGTTTAATTTACGGAGAAACT 10455 Query 16553 CGTG 16556 |||| Sbjct 10456 CGTG 10459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073633792109