Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq1368 122 1e-22 seq165 91.5 2e-13 >seq1368 Length=130540 Score = 122 bits (134), Expect = 1e-22 Identities = 178/249 (71%), Gaps = 6/249 (2%) Strand=Plus/Plus Query 193946 TGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGAT 194005 |||||| ||||| ||||||||||| || |||||||||| | |||||||| ||||| || Sbjct 18331 TGGTATACTCTTTAATCACGAATCACCGCGAAGAGGTGAAAATTTTGTAACACGTAAAAT 18390 Query 194006 TACACAAGGTTTATCTAAGATCTCTGT---TGGATTACAGAAGATTCTTTATCTTGGTAA 194062 ||| | | || | || |||| | | | ||| ||| | | | || | ||||| Sbjct 18391 TACCCGATCAGTAGCAAAAATCTATCTCAATCAATTG--GAATACTTTGAAT-TGGGTAA 18447 Query 194063 TCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTGGTTAAT 194122 | | || | || | |||||||| || || | ||||||||| || || |||||| | || Sbjct 18448 TTTAGATTCAAAACGTGATTGGGGTCATGCTATGGATTATGTAGAGGCCATGTGGATGAT 18507 Query 194123 GTTGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGGTGAACAGTATTCTGTTAG 194182 |||||||||||| ||||| |||||||| ||||| || || ||| | || ||| | Sbjct 18508 GTTGCAACAGGAGAAACCCTCAGATTATGTCATTGCCACCGGAGAAACGCATAGTGTACG 18567 Query 194183 AGACTTTGT 194191 || ||||| Sbjct 18568 TGAATTTGT 18576 >seq165 Length=448888 Score = 91.5 bits (100), Expect = 2e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 156931 ATTGATATTGTTGCAGTAAACTTATATCCTTTCGCAGAAACAGTTGCTAAACC-AGATGT 156989 |||||||| || | || ||||||||||| || ||| |||| || || ||||| | ||| Sbjct 228341 ATTGATATGGTCGTCGTTAACTTATATCCATTTGCACAAACTGTCGCAAAACCTAACTGT 228400 Query 156990 AACTCTTGCAGATGCAATAGAGAATATTGATATTGGTGGTCCTAGTATGGTGAGATCAGC 157049 || | | |||||| | |||||||| ||||||||||| || | ||||| | || || Sbjct 228401 -ACATTAGAAGATGCCGTTGAGAATATCGATATTGGTGGGCCAACAATGGTTCGCTCTGC 228459 Query 157050 AGCAAAGAATTATAAGGATGTTGC 157073 ||||| || |||| |||||||| Sbjct 228460 GGCAAAAAACCATAAAGATGTTGC 228483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807537908224280