Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq869 196 5e-45 >seq869 Length=1271022 Score = 196 bits (216), Expect = 5e-45 Identities = 461/692 (67%), Gaps = 10/692 (1%) Strand=Plus/Minus Query 21310 ATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATTTTAC 21369 ||| || |||||||||||||||| ||||||||| ||||||||| || ||||| || || Sbjct 484139 ATCGGCCACAAATTCTATATATTCCGACATTAATTTACAATTCATGCCTATCAAATTGAC 484080 Query 21370 AGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATATTTAT 21429 || | ||| | ||| | || | ||| || || |||||| || || | || Sbjct 484079 GGGCAAAGCATCTGTAAGGAATTCCTGTTCAATTTTCACCGCTTCAGTGATAATTTCAAT 484020 Query 21430 TATCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAA-ACATGCAAAATCAC 21488 || || | ||| || | | | || ||||||||||| || ||| |||||||||| Sbjct 484019 AATTCTCTCTCGACTGGGACGTTGTACCAAATGTTTAAACATTAATACA-GCAAAATCAC 483961 Query 21489 AATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATC 21548 |||| ||||| ||||| | ||| || ||||| || ||||| | ||| ||||| | | Sbjct 483960 AATGTAAACCCTCATCACGTGATATCAACTCATTGGAGAATGTAAGACCAGGCATAAGAC 483901 Query 21549 CTCTCTTTTTTAACCAAAATATTGACGCAAA--TGCTCCTGAAAAGAAAATGCCCTCAAC 21606 | | || |||| |||||| || || ||||| ||| || ||||||||| ||||| || Sbjct 483900 CACGTTTCTTTAGCCAAAAGATGGAAGCAAAACTGCCACT--AAAGAAAATACCCTCTAC 483843 Query 21607 GGCAGCAAATGCAACTAAT-CGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTTT 21665 |||||||| |||| |||| |||||||| | | | | ||| | ||||| Sbjct 483842 AGCAGCAAAAGCAA-TAATACGTTCACCAAAATTTGCTGATTTCGAAGAAATCCAAGCCA 483784 Query 21666 CTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGATGAt 21725 |||||| | ||||| |||| | || || |||||||| || || |||| || Sbjct 483783 TTGCCCAATCGGCCTTACGCTTAACAGCTGGCATAGTTTCAATAGCATTAAAGAGATAAT 483724 Query 21726 ttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAATGTA 21785 | || ||| | || ||||||||||||||| |||| Sbjct 483723 CACGCTGTTCACGATCCTTAATATAACTATCAATTAGAATACTATACATTTCAGAGTGTA 483664 Query 21786 TATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAACCTCGG 21845 |||||| || || || ||||| || || ||||| | |||||||| | ||| || || Sbjct 483663 CATTTTCCATGGCAATTTGAAAGCCATAGAAACAGCGTGCCTCTGTAACTTGTACTTCTT 483604 Query 21846 AATAAAATCGTTGAGCCAAG-TTTTCATTTACTATTCCATCACTGGCGGCAAAAAATGCC 21904 | | || |||| | |||| |||||||| || || ||||| ||||| || || || Sbjct 483603 GAGAGAAACGTT-CGACAAGATTTTCATTGACAATGCCATCGGAAGCGGCGAAGAAAGCA 483545 Query 21905 AATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAATCTAATAAATCT 21964 | | || | || |||| || || || || || | | ||| ||| || | |||| Sbjct 483544 AGAACATGTGAAATGAAATGACGCTCATTGTCGGTGAGTCTTTCCCAGTCGGAGTTATCT 483485 Query 21965 TTTGATAAATCTACTTCTTCAGTTGTCCAAAA 21996 || || | |||||||||||| |||||||| Sbjct 483484 TTAGAAAGATCTACTTCTTCTACCGTCCAAAA 483453 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 |||||||||| |||||||||| |||||||||||| | || | | |||| || Sbjct 484391 TTTAAAAATCGGCATCTAATGTAAAAACATTATCTAAACGATGAGAAGTTACACCCAATT 484332 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 ||||||| |||| |||| | ||| || |||||||| || || ||||| || || || Sbjct 484331 TTTGATATTCACCAACTTTACGTTCAAAGAAATTTGTTTTACCATCCAAAGAGATCATTT 484272 Query 21246 CCATAAAATCAAATGGATTTT 21266 ||||||| || ||||||| Sbjct 484271 CCATAAAGGGGAAGGGATTTT 484251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531889410674120