Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1348 585 3e-162 seq869 293 3e-74 seq583 138 1e-27 seq1394 105 8e-18 >seq1348 Length=1847788 Score = 585 bits (648), Expect = 3e-162 Identities = 1504/2268 (66%), Gaps = 32/2268 (1%) Strand=Plus/Plus Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054 || |||||||| | | || || ||||| || | | ||| ||||| || || |||| Sbjct 1698168 GTAAATTGAATAGCATTGGCGGCTGGTTTTGTTCTCAAATAATACATGCCGGTCTTTAAG 1698227 Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62114 || |||| | || ||||| || || | |||| ||| | || || || | | Sbjct 1698228 CCTGATTTCCAGGCATAGAAATGTATGGAGGTCAATTTGCCGTAATTTGGCTCGGCCACA 1698287 Query 62115 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62174 || ||||| | |||||||||||||| ||||| || || | ||| |||||||||| |||| Sbjct 1698288 TGTATATTGAACGATTGACTTTGATCTATGAAAGCGCCACGGTCGGCAGCCATTTGTATG 1698347 Query 62175 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAAG 62233 | ||||| | ||| ||||||| ||||| || | || | || ||| || || | Sbjct 1698348 GTGGTCTTAACGGAAATCTCCCAAACTGTTTTGTATAGATCACGTA-TATGTTTGGGTAT 1698406 Query 62234 GT-TTGTATTC--TGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATT 62290 | || ||| || ||||| || | || | ||||| |||| || || ||||||| Sbjct 1698407 TTCTTCTATGGCTTGTATGGAGCCGCGATTGGAAATAATTTTATTTTTCATTTCATCATC 1698466 Query 62291 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 62350 |||||| | ||||||||| || |||| | ||| |||| || || | |||||||| Sbjct 1698467 CCATAAATCAAGTTCGGTTAAATCTTTAAGCAAATGATGATTGACAACATTGAATTCTCC 1698526 Query 62351 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCC 62410 ||||| || | | ||||||||||||| ||| |||||||| | || ||||| || || Sbjct 1698527 CGACAAAACACGTCTAGTGTAAATATTAGAGGTGTACGGTTCAAAGGATTCATTGTTGCC 1698586 Query 62411 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 62470 | |||||| || || || || || ||||| || || | | ||| ||| | | ||| Sbjct 1698587 TAGAATTTGTGCGGTCGAAGCTGTGGGCATTGGGGCTAATAGCAAAGAATTGCGTACACC 1698646 Query 62471 GTATGTT--CTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACN 62528 ||||| |||||||| || || | | ||| ||||| | || | ||| Sbjct 1698647 --ATGTTGACTGATTTTCTCCTTCAACTCTGACCAGTTCCACAAGTCTGTGGGTGTTTTA 1698704 Query 62529 NNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTA 62587 |||||| ||||| ||||| | | || | || ||| || || || Sbjct 1698705 TTCCACATATCATATTGTAGTATACCCTTACTTACTGGAC-AGCCGGGATAAGTTTCATA 1698763 Query 62588 TGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTC 62647 || || || || || || | ||||||||| || || || || || |||||||| ||||| Sbjct 1698764 TGTGCCATCTTTTTCGGCCAATTCACAACTAGCTTCCAAAGCGCCATAATAAATAGTTTC 1698823 Query 62648 GAAGATCTTCTTATTTAGATCTTGTGC--TTCCAGGCTATCAAATGGATAATTTAAGAGA 62705 ||| |||| | ||||| ||| || || || ||| | || ||| | | | Sbjct 1698824 GAAAATCTGTTGATTTAACAAAAATGCCTTTTCA--CTCTCATAGGGGTAACGCATTAAA 1698881 Query 62706 ATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAG 62765 || || | || || || || |||||||| ||||| ||||| | ||| | | ||| || Sbjct 1698882 ATCAAAGTATCGGCAAAACCCTGAACACCTATACCAATAGGACGATGACGCAAATTGGAC 1698941 Query 62766 ATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACA 62825 || |||||| || | |||||| | || || || || ||||| |||||||| || | Sbjct 1698942 TTTCTAGCTTCGGGCAACGGATAAAAGTTGATGTCGATGATTTTGTTGAGATTCTTGGTA 1699001 Query 62826 ATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA---TTACAAAC 62882 || ||||| |||| |||| ||| |||||||| | ||| | |||||| Sbjct 1699002 ATAACTTTTGTAACATTTTTCAATTTTTTGAAATCAAAGGTCTTTTCTGGCGTGACAAAC 1699061 Query 62883 ATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGT 62942 || || | ||||| || |||| ||||||||| |||| ||||| || | | ||||| | Sbjct 1699062 ATATTAAGGGCAATGGAGGCCAAATTACAAACAGCTATCTCATCAGGGGCAGAATATTCT 1699121 Query 62943 ATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTT 63002 | ||||| ||||| | || || ||||| || || || | ||||| || || || || Sbjct 1699122 ACAATCTCTGTGCATAAGTTGCTGCACTTAATGGTGCCAATGTTTTGCTGGTTGCTTTTG 1699181 Query 63003 TTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATA 63062 ||| || ||||| || || | || | || ||||| ||||||| |||| ||| || Sbjct 1699182 CGGTTGCAAGCATCTTTGTACAACATATAGGGTGTACCGGTTTCAACTTGAGCTTCAATT 1699241 Query 63063 ATCGCTTTCCAGACGACTCGAGCCTTTATTATA-GATTTGTATCTCCTTTCTCTTTCGTA 63121 || || ||| | | |||| || | | |||| | | ||||| || |||| || Sbjct 1699242 ATAGCAAACCAAAGAGCCTGAGCTTTGACGGTGCGATTGGCTTTTCCTT-CTTTTTCATA 1699300 Query 63122 TAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATC 63181 ||||||||| ||||||||| || |||||||||| | || || ||||||| | Sbjct 1699301 CTTGGTATACAATTCTTCGAACTCCTCACCCCAAACATCCTGCAGACCGGGACATTTGTG 1699360 Query 63182 CGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAAT 63241 |||||||| | ||||| || || | || | ||| ||||||||||| | || || || Sbjct 1699361 TGGACACATTAGGGACCAGTCACCATTTTCTTCCACACGTTTCATAAACAAGTCGGGTAT 1699420 Query 63242 CCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAA 63300 ||| ||||| ||| || |||||||||| |||||| || || || || ||||| || || | Sbjct 1699421 CCACAGAGC-ATAGAAAAGATCTCTGGCTCTATGCTCTTCCTTGCCGGTATTTTTCTTTA 1699479 Query 63301 GATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAG 63360 ||| | || | | |||||| |||||||| || ||||| || || || | | |||| Sbjct 1699480 AATCCAAAAATTCAAAAATATCTGAATGCCAAGGCTCCAAATAAATAGCAAAGGCACCAG 1699539 Query 63361 GCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTG 63420 | |||||| || |||||||| | || | || || ||| | || || | ||||| Sbjct 1699540 GGCGTTTGCCACCACCCTGATCAACATAGCGGGCTACATTGTTAAACACCCTGAGCATTG 1699599 Query 63421 GAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAAT-- 63478 | | | ||| ||||| | || || || ||| || | | || |||| | || Sbjct 1699600 GTACCAGACCATTTGAGGTGCCGTTTGTGCCGTCAATGGAAGTGCCCTTGGCCCTTATGC 1699659 Query 63479 ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA 63538 | | || | || || || || || ||| ||| || || | || ||| ||| | Sbjct 1699660 AGT-GTACGT-TTATGCCAATACCACCCGCCGATTTGGATATCATGGCACATTGTTCCAC 1699717 Query 63539 CGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACAT 63598 | | | |||||||| || ||| | | |||| | | || ||||| |||| Sbjct 1699718 TGACTTGAAAATACCCTCAATAGAATCGGCCACCATGGTCAATAAGAAACACGACGACAA 1699777 Query 63599 TTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTC 63658 || | | | | || | || || || ||||| || || || ||||| | || Sbjct 1699778 CTGCGGTCTATTGGTAGCAGCCGCGAACAATGTAGGCGACGCATGGGTAAAATAACGCTC 1699837 Query 63659 AGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGC 63718 ||| | | ||| || || |||||||| || || ||||| | ||| || |||| || Sbjct 1699838 AGACAACAAATTATAAGTTTCAATAGCCGAATCAATATCGTCTCCATGTATACCTATAGC 1699897 Query 63719 GACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTA 63778 || | ||||||||| ||||| ||||| ||||| ||||| || ||||| | ||| || Sbjct 1699898 TACTCTCATTAACATATGCTGTGGTCTCTCAACAATCTTACCATTCATTTTTAGCAAATA 1699957 Query 63779 GGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 ||| | |||| ||||| || || || |||||||| |||||| || || |||||||| Sbjct 1699958 AGATCTCTCCAGTGTTTTGAAGCCGAAGTAGTTGTAGCCAAAGTCACGATCATAAATAAT 1700017 Query 63839 AACCGAGTTGAGTTTATCCTTATATTTGTTAACTATAT--CCATGGTGATACTTGAAATA 63896 ||| || | || || ||| | |||| || ||||| || | ||||| Sbjct 1700018 TGACGAATTCAAACGTTCTGCATTTTTCTGCACTACATTGTAATGGT-ATTC-GGAAATC 1700075 Query 63897 ATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCA 63956 | || || || ||| | | ||||||| | | | | ||| || || || Sbjct 1700076 AATGGCGATGGTCGCCCCGTCTCTTTATTAACAAAATGATACAGATCACTTATAACCTCT 1700135 Query 63957 CTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATG 64016 |||| |||||| ||||| ||||| | ||| || || || || | || || | ||| Sbjct 1700136 GAGAATACTTTTTTCGTTTCTTTGTGCAAATTGGAGACAGCAATGCGAGCTGCCAATATG 1700195 Query 64017 GCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAAT 64076 |||||||| ||| | |||||| | || ||||| | || || |||| | |||||| | Sbjct 1700196 GCATAATCTCCATGATTTGTAGTTAATGTAGCTGCGGTCTCTGCCGCCAAATTGTCCAGT 1700255 Query 64077 TCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCATAGCTATTTTAATAGGA 64136 ||| || || || ||| || | || | ||| ||||||| | || | ||| Sbjct 1700256 TCTTGTGTAGTAACACCACAGTAAAGGCCATTAATTACCTTCAGTGTAATGGCCACTGGA 1700315 Query 64137 TCTATATGATCCGTGTTTAAGCCATAACATAATTTTCTAATACGAGACGTGATTTTATCA 64196 || | | |||| |||| ||||||||||||| ||| || || || || |||||||| Sbjct 1700316 TCAACAAAATCCATGTTCAAGCCATAACATAGCTTTTGTATGCGTGATGTTATTTTATCG 1700375 Query 64197 AACATG-ACATTTTCCTTGTATCCATTTCGTTTAATGACAAACATTTT 64243 || ||| || | ||||||| ||||| |||||||| ||||| | ||| Sbjct 1700376 AA-ATGTACCTCTTCCTTGCGTCCATCTCGTTTAAGAACAAATAATTT 1700422 >seq869 Length=1271022 Score = 293 bits (324), Expect = 3e-74 Identities = 507/727 (70%), Gaps = 15/727 (2%) Strand=Plus/Minus Query 33119 CCAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAAT 33178 ||||||| | ||| | ||| || || |||||||||||| ||| | || ||||| Sbjct 484158 CCAATTCCACCAGCAAACGATCGGCCACAAATTCTATATATTCCGACATTAATTTACAAT 484099 Query 33179 TCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCG 33238 |||| ||||| | || || || | ||| | ||||| ||||| |||||||| |||| Sbjct 484098 TCATGCCTATCAAATTGACGGGCAAAGCATCTGTAAGGAATTCCTGTTCAATTTTCACCG 484039 Query 33239 CATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACA 33298 | || || ||||| ||| | ||| ||| || | || | ||||||||||||| Sbjct 484038 CTTCAGTGATAATTTCAATAATTCTCTCTCGACTGGGACGTTGTACCAAATGTTTAAACA 483979 Query 33299 TCAA-ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 33357 | || ||| || ||||| || || | |||||| || | || | || ||||| || Sbjct 483978 TTAATACA-GCAAAATCACAATGTAAACCCTCATCACGTGATATCAACTCATTGGAGAAT 483920 Query 33358 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAA 33417 || || || ||||| || ||||| || || |||||||| |||||||| || ||| | Sbjct 483919 GTAAGACCAGGCATAAGACCACGTTTCTTTAGCCAAAAGATGGAAGCAAAACTGCCACTA 483860 Query 33418 AAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCTGTC 33476 ||||| || || ||||| |||||||| ||||||| | || ||| || || | | || Sbjct 483859 AAGAAAATACCCTCTACAGCAGCAAAAGCAATAATACGTTCACCAAAATTTGCTGATTTC 483800 Query 33477 --ATGTATCCA--CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33532 | ||||| | ||| ||||||||||||| || ||| ||||| ||||| | Sbjct 483799 GAAGAAATCCAAGCCATTG--CCCAATCGGCCTTACGCTTAACAGCTGGCATAGTTTCAA 483742 Query 33533 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33592 | |||||||||||||| | | | || ||| |||| |||| |||| || | || || Sbjct 483741 TAGCATTAAAGAGATAATCACGCTGTTCACGATCCTTAATATAACTATCAATTAGAATAC 483682 Query 33593 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33652 |||||||||| || || | ||||| ||||| || ||||| || |||||||| | |||| Sbjct 483681 TATACATTTCAGAGTGTACATTTTCCATGGCAATTTGAAAGCCATAGAAACAGCGTGCCT 483622 Query 33653 CGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCAC 33712 | |||| ||||||||| | | || ||||| | | ||||||||| || || || || Sbjct 483621 CTGTAACTTGTACTTCTTGAGAGAAACGTTCGACAAGATTTTCATTGACAATGCCATCGG 483562 Query 33713 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT---ATTTTTCGTCTGGTGTTAGTT 33769 || || || || || | |||||| || |||| | | ||| |||| ||| Sbjct 483561 AAGCGGCGAAGAAAGCAAGAACATGTGAAATGAAATGACGCTCATTGTC-GGTG--AGTC 483505 Query 33770 TATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCT 33829 | | ||| || | |||||||||| | |||||||||||| || |||||||| || || | Sbjct 483504 TTTCCCAGTCGGAGTTATCTTTAGAAAGATCTACTTCTTCTACCGTCCAAAAAGAAGCTT 483445 Query 33830 CTGCCTT 33836 | ||||| Sbjct 483444 CGGCCTT 483438 >seq583 Length=2816 Score = 138 bits (152), Expect = 1e-27 Identities = 314/467 (67%), Gaps = 4/467 (1%) Strand=Plus/Minus Query 32994 TTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTT 33053 || || |||||| || || ||||| |||| ||||| || || || || ||||| || Sbjct 635 TTTAGCCATAACACCGGCCTTCTGGTAGTCACTAACACGCTTCTCAAAGAAGTTAGTCTT 576 Query 33054 TCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAttttttt 33113 || |||| || ||||| ||||||||||| || ||||||| ||| || ||||| || | Sbjct 575 ACCAGCCAAAGAGATATTCTCCATGAAATCGAAGGGATTGGCAACCTTGTAAATCTTCTC 516 Query 33114 AAATCCCAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTC 33173 | ||||| || || || | || || ||| | || | || ||||||| || Sbjct 515 ATGGCCCAAGGCAACCATTAAACGGTCAGCTACGTACTCAACGTACTGATTCATCAAATC 456 Query 33174 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCA-GTAAGAAATTCTTGTTCAATGG 33232 | |||||| || | | | ||| || | ||| || | ||| | | |||||||||| Sbjct 455 AGCATTCATACCAAGCAAGTGAACAGGCAAAGCATCACGGAAGTACT-CTTGTTCAATAT 397 Query 33233 ATACCGCATCTGTTATAATA-GATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGT 33291 || || || || |||||| | || || | || ||| || | | | ||| || Sbjct 396 CAACAGCCTCGGTCATAATACGCTC-AATAATCTCACGACTGGGACGGTTCTCTAAGTGA 338 Query 33292 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTG 33351 || | | ||| |||||||| ||||| |||||| ||||| ||| || || || Sbjct 337 GAGAAGAGAAGACAAGCGAAATCAGTGTGCATACCCTCATCTCTGGAAATAAGCTCATTA 278 Query 33352 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT 33411 || || | || ||||| | ||||||||| || | ||| || |||| ||||||||| Sbjct 277 CTGAATGTTAAACCAGGCATCAAGCCACGCTTCTTCAACCAGAAAATGGCAGCGAATGAA 218 Query 33412 CCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTC 33458 ||| ||||||| || || || ||||| || || | | |||||| Sbjct 217 CCACTGAAGAAGACACCCTCGACAGCAGCGAAAGCGACTAATCTCTC 171 >seq1394 Length=309634 Score = 105 bits (116), Expect = 8e-18 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 28461 AATACCCAATTCTTTGACCTGAGTTAGTGATCTCCAATCCATGTTAGCGCTTCCTAAATA 28520 |||||| |||||||| ||||| |||| |||||||| ||||| || || || || ||||| Sbjct 287882 AATACCTAATTCTTTAACCTGCGTTAAAGATCTCCAGTCCATATTGGCACTGCCCAAATA 287941 Query 28521 AATATGTGTATTATCAGATATCCAAAATTTTGTATGAAGAACTCCTCC 28568 ||||||| | || ||||| ||||| ||||||||||| | ||| || || Sbjct 287942 AATATGTTTTTTGTCAGAAATCCAGAATTTTGTATGTAAAACACCACC 287989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622933861143080