Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1348 291 2e-73 seq869 113 1e-19 seq1349 84.2 6e-11 >seq1348 Length=1847788 Score = 291 bits (322), Expect = 2e-73 Identities = 703/1054 (67%), Gaps = 19/1054 (2%) Strand=Plus/Minus Query 363430 ATCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATC 363489 || |||||| | |||||||| | || ||||||||||||||| | || ||||| ||||| Sbjct 1699945 ATGAATGGTAAGATTGTTGAGAGACCACAGCATATGTTAATGAGAGTAGCTATAGGTATA 1699886 Query 363490 CATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTC 363549 ||| | ||| ||||| | || |||||||| ||||| | | || ||| || Sbjct 1699885 CATGGAGACGATATTGATTCGGCTATTGAAACTTATAATTTGTTGTCTGAGCGTTATTTT 1699826 Query 363550 ACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGC 363609 || || || |||| ||| ||| | |||| || || || ||| |||| || || Sbjct 1699825 ACCCATGCGTCGCCTACATTGTTCGCGGCTGCTACCAATAGACCGCAGTTGTCGTCGTG- 1699767 Query 363610 TTTCTTCTAAAA-ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTG 363668 |||||| | | ||| || |||||| || |||||||| || | || | | | || Sbjct 1699766 TTTCTTATTGACCATGGTGGCCGATTCTATTGAGGGTATTTTCAAGTCAGTGGAACAATG 1699707 Query 363669 TGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACA 363728 ||| | || ||||| || || || ||||| || | ||| | | || | Sbjct 1699706 TGCCATGATATCCAAATCGGCGGGTGGTATTGGCATAAACGTACACTGCATAAGGGCCAA 1699647 Query 363729 GAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGT 363788 | || || |||| ||||||| || ||| ||||| ||||| || ||||| | || Sbjct 1699646 GGGCACTTCCATTGACGGCACAAACGGCACCTCAAATGGTCTGGTACCAATGCTCAGGGT 1699587 Query 363789 GTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGC 363848 |||| ||||| || | || || || |||||||| || || ||| || || ||||| Sbjct 1699586 GTTTAACAATGTAGCCCGCTATGTTGATCAGGGTGGTGGCAAACGCCCTGGTGCCTTTGC 1699527 Query 363849 TATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACAC 363908 ||| ||| | |||||| ||| | ||||||||||| ||| | || | |||||| || Sbjct 1699526 TATTTATTTGGAGCCTTGGCATTCAGATATTTTTGAATTTTTGGATTTAAAGAAAAATAC 1699467 Query 363909 GGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTT 363968 || || || || | || | ||||| |||||||| || ||| | | ||| || Sbjct 1699466 CGGCAAGGAAGAGCATAGAGCCAGAGATCTTTTCTATGCTCTGTGGATACCCGACTTGTT 1699407 Query 363969 TATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGG 364028 |||||| || ||||| | | | | ||||| || | || |||||| ||||||| || Sbjct 1699406 TATGAAACGTGTGGAAGAAAATGGTGACTGGTCCCTAATGTGTCCACACAAATGTCCCGG 1699347 Query 364029 TCTTTCCGATGTATGGGGTGACGACTATGTTG--CTCTATACGAAAAGTATGAATCGGAG 364086 ||| ||||| |||||||| || | | | | ||||| ||||||||| || Sbjct 1699346 TCTGCAGGATGTTTGGGGTGAGGAGTTCGAAGAATTGTATAC--CAAGTATGAAAAAGAA 1699289 Query 364087 GGAAAGGC---TCGTA-AGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTC 364142 ||||| || ||| | | ||| || ||| || |||||||| || || || | Sbjct 1699288 GGAAAAGCCAATCGCACCGTCAA----AGCTCAGGCTCTTTGGTTTGCTATAATTGAAGC 1699233 Query 364143 GCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAA 364202 || |||| || || |||||||||||||||||||||||| | ||||||||||| ||| Sbjct 1699232 TCAAGTTGAAACCGGTACACCCTATATGTTGTACAAAGATGCTTGCAACCGCAAAAGCAA 1699173 Query 364203 CCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACAC 364262 |||||| || |||| || ||| || |||||| |||| || |||||| | ||||| | Sbjct 1699172 CCAGCAAAACATTGGCACCATTAAGTGCAGCAACTTATGCACAGAGATTGTAGAATATTC 1699113 Query 364263 CGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAA- 364321 || || || |||| || || ||||| | || || || || ||| |||||| | Sbjct 1699112 TGCCCCTGATGAGATAGCTGTTTGTAATTTGGCCTCCATTGCCCTTAATATGTTTGTCAC 1699053 Query 364322 --AAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAA 364379 ||| || ||||| | | | | | | || || | | ||| || Sbjct 1699052 GCCAGAAAAGACCTTTGATTTCAAAAAATTGAAAAATGTTACAAAAGTTATTACCAAGAA 1698993 Query 364380 TCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC-CGAGCGTTCTAATA 364438 |||| |||| | ||||||| || | |||||| | || ||||| || | || ||| Sbjct 1698992 TCTCAACAAAATCATCGACATCAACTTTTATCCGTTGCCCGAAGCTAGAAAG-TCCAATT 1698934 Query 364439 TGCGTCATCGCCCGATTGGTCTTGGTGTACAGGG 364472 |||||||||| || |||||| | ||||| ||||| Sbjct 1698933 TGCGTCATCGTCCTATTGGTATAGGTGTTCAGGG 1698900 >seq869 Length=1271022 Score = 113 bits (124), Expect = 1e-19 Identities = 124/160 (78%), Gaps = 5/160 (3%) Strand=Plus/Plus Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCA-TTTTG-TG 22546 |||||| ||||||| ||||||| || || || ||||||||| ||| || ||||| | Sbjct 483819 GAACGTATTATTGCTTTTGCTGCTGTAGAGGGTATTTTCTTTAGTGG--CAGTTTTGCTT 483876 Query 22547 CAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAA 22606 | |||||||||||||| ||||||| ||||||| ||||| || || || |||||||| | Sbjct 483877 CCATCTTTTGGCTAAAGAAACGTGGTCTTATGCCTGGTCTTACATTCTCCAATGAGTTGA 483936 Query 22607 TTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTAT 22646 | || ||||||||| | ||| |||||||| ||||| Sbjct 483937 TATCACGTGATGAGGGTTTACATTGTGATTTTGC-TGTAT 483975 >seq1349 Length=137958 Score = 84.2 bits (92), Expect = 6e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 65872 TTACGAATCGTTCCGTCATAATTGCACATATTATCTTCACTTGCCTTTACAAGACAACGC 65931 ||||| | || || |||||||| ||| | ||| | ||||||| ||||| |||| Sbjct 4753 TTACGCACAGTACCATCATAATTAACCATTACAGATTCCATAGCCTTTATAAGACGACGC 4812 Query 65932 TGGATGTAACCACTGTTTGCAGTTTTTACCGCGGTATCAACGAGACCTTCACGCCC 65987 ||||| |||||| | | ||||||||||| || ||||||| ||||||||||| || Sbjct 4813 TGGATATAACCAGTTTCAGCAGTTTTTACAGCTGTATCAATAAGACCTTCACGACC 4868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303324994239566