Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq1348 132 4e-26 seq964 98.7 9e-16 seq1190 96.9 3e-15 seq1304 89.7 4e-13 >seq1348 Length=1847788 Score = 132 bits (146), Expect = 4e-26 Identities = 703/1100 (64%), Gaps = 36/1100 (3%) Strand=Plus/Plus Query 131864 ACGGTGAATTGAATTGTATTCGCAGCAGGCTTAGTTCTTAAATAATACATGCCCGTCTTC 131923 ||||| |||||||| | ||| || || || || ||||| |||||||||||||| ||||| Sbjct 1698165 ACGGTAAATTGAATAGCATTGGCGGCTGGTTTTGTTCTCAAATAATACATGCCGGTCTTT 1698224 Query 131924 AAGCCTTTCTCCCAAGAATAATTGTGTATGGACGATAAAATTTTGTAGCTGGGATTGGCC 131983 |||||| | ||| | ||| |||||||| | || | ||| | || | |||| Sbjct 1698225 AAGCCTGATTTCCAGGCATAGAAATGTATGGAGGTCAATTTGCCGTAATTTGGCTCGGCC 1698284 Query 131984 ACAAACAGATTGAGCGATTGACTCTGATCGATGTAAGGTCCCCTGTCTGCGGCCATATTC 132043 ||| | ||||| ||||||||| ||||| ||| ||| || | ||| || ||||| || Sbjct 1698285 ACATGTATATTGAACGATTGACTTTGATCTATGAAAGCGCCACGGTCGGCAGCCAT-TTG 1698343 Query 132044 AACAATACTTTCTGCTTAATT-TCCCAAGCGGTCTTGAAGAG--CGCCTTGACGTCGTGT 132100 | | | | | || | |||||| | || ||| | || | | | | || || Sbjct 1698344 TATGGTGGTCTTAACGGAAATCTCCCAAACTGTTTTGTATAGATCACGTATATGTT-TG- 1698401 Query 132101 GGAATGTCATCGATATTCTGTACAGATCCGTTGTTTTTGATAATTTTCATCATCAGTTCT 132160 || || || || || |||| || ||| || |||||||| | ||| ||| Sbjct 1698402 GGTATTTCTTCTATGGCTTGTATGGAGCCGCGATTGGAAATAATTTTATTTTTCATTTCA 1698461 Query 132161 G--TCGAGTA---CACGTTGCAGTCTACGAGTTTATCGACGAGATGTTGATTTACTAT-T 132214 || || || ||| | || || |||| | | ||| ||||| || | | Sbjct 1698462 TCATCCCATAAATCAAGTT-CGGT-TAAATCTTTA---AGCAAATGATGATTGACAACAT 1698516 Query 132215 TGATATTCACCCGATAAGACTCTTCGTACGTACAAATTACTAGTAAACGGCTCGAACGAT 132274 ||| |||| ||||| || || | || ||| | |||| || |||| || || ||| Sbjct 1698517 TGA-ATTCTCCCGACAAAACACGTCTAGTGTAAATATTAGAGGTGTACGGTTCAAAGGAT 1698575 Query 132275 TCGTTGTTTCCCAATATTTGAGCTGTCGTTGCCGTCGGCATGTAGGCAATCAATAATGAA 132334 || ||||| || | ||||| || |||| || || ||||| ||| | | || ||| Sbjct 1698576 TCATTGTTGCCTAGAATTTGTGCGGTCGAAGCTGTGGGCATTGGGGCTAATAGCAAAGAA 1698635 Query 132335 TTGCGCAGCCCGTGTATGGCC-ATTTGCCGTTTAAGCTCGTCCCAGTTCCACAGATCATT 132393 ||||| | || ||| || | |||| | || | ||| ||||||||||| || | Sbjct 1698636 TTGCGTACACCATGT-TGACTGATTTTCTCCTTCAACTCTGACCAGTTCCACAAGTCTGT 1698694 Query 132394 CGATTGAGAGATATTCCACAAATCAAACTGTAAATGACCGCTACTTGCAGGAGATCCGTT 132453 | | | ||||||||| |||| | |||| ||| ||||| | ||| | ||| Sbjct 1698695 GGGT---GTTTTATTCCACATATCATATTGTAGTATACCCTTACTTACTGGACAGCCGGG 1698751 Query 132454 ATAAGAATCGTATGCTCCGTGTAATTTGGCAAGTTCTATGCTCTGACTCAGGGCACCATA 132513 ||||| || |||| || | | || ||| | ||| || || || ||||| Sbjct 1698752 ATAAGTTTCATATGTGCCATCTTTTTCGGCCAATTCACAACTAGCTTCCAAAGCGCCATA 1698811 Query 132514 ATAAATAGTCTCTGAGATTTTTCTATTCAATTCCCTTGCTTGTTGACTGTCGTAGGGCAA 132573 ||||||||| || | || | | ||| || ||| | || ||| || ||||| | Sbjct 1698812 ATAAATAGTTTCGAAAATCTGTTGATTTAACAAAAATGCCTTTTCACTCTCATAGGGGTA 1698871 Query 132574 AT---TTAAAATAGCGAACGCATCGGCAAGTCCCTGAATGCCGATACCGATGGGTCTATG 132630 | ||||||| || | |||||||| ||||||| || ||||| || || | ||| Sbjct 1698872 ACGCATTAAAATC---AAAGTATCGGCAAAACCCTGAACACCTATACCAATAGGACGATG 1698928 Query 132631 TTTAAAATTCGATACTTGTGCGCTA--GTCAGCGGATAAAAGTTTTTGTCTATTATTTTA 132688 ||||| || ||| ||| | || |||||||||||| |||| || ||||| Sbjct 1698929 ACGCAAATTGGA--CTTTCTAGCTTCGGGCAACGGATAAAAGTTGATGTCGATGATTTTG 1698986 Query 132689 TTGAGATTGTTAGTGACAACTCTAGCCACTTTATATAGCGATTCAAAGTCAAAGTTTTTA 132748 |||||||| || || | |||| | | || || | | || || |||||| | || Sbjct 1698987 TTGAGATTCTTGGTAATAACTTTTGTAACATTTTTCAATTTTTTGAAATCAAAGGTCTT- 1699045 Query 132749 GTCCTTTTGTTGGCAAAACAATTGACGGCAATCGAGGCCAAATTGCATACGGCTGTCTCT 132808 | || | || |||| ||| | |||||| ||||||||||| || || ||| |||| Sbjct 1699046 -TTCTGGCG-TGACAAACATATTAAGGGCAATGGAGGCCAAATTACAAACAGCTATCTCA 1699103 Query 132809 TTATTATCGCTATACTGTACGATTTCTGCACACAAATTACTGTTTCGAATAACTCCCAAG 132868 | | | ||| | ||| || |||| || || || ||| ||| || | | Sbjct 1699104 TCAGGGGCAGAATATTCTACAATCTCTGTGCATAAGTTGCTGCACTTAATGGTGCCAATG 1699163 Query 132869 tttttttGATTGTTTTTCTCGTTTACGTTATCTTTATGCAACATGTACGGACCTCCGGTT 132928 |||| || ||| |||| ||| |||||| | |||||| || || |||||| Sbjct 1699164 TTTTGCTGGTTGCTTTTGCGGTTGCAAGCATCTTTGTACAACATATAGGGTGTACCGGTT 1699223 Query 132929 TCGACCTGAATTTCGATAAT 132948 || || ||| ||| || || Sbjct 1699224 TCAACTTGAGCTTCAATTAT 1699243 >seq964 Length=291957 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||||||||| || ||| | ||||| | || || || | Sbjct 215640 ATGCAAATTTTCGTTAAAACATTAACGGGTAAAACAATTACATTGGAGGTTGAACCTTCG 215699 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | || ||| || || ||||||||||| || || || |||||| Sbjct 215700 GATACTATAGAAAATGTTAAAGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCAA 215759 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | |||||| || || || || | ||||||| | | | | |||||||||| Sbjct 215760 CAGCGTTTGATTTTCGCTGGTAAACAGTTGGAAGATGGCCGCACTTTATCCGATTATAAC 215819 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 ||||||||||||||||| |||| || || || Sbjct 215820 ATTCAAAAAGAATCTACCCTTCACTTGGTATT 215851 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || ||||| ||||| ||| | || || | ||||| ||| | Sbjct 215412 ATGCAAATCTTTGTTAAGACATTGACTGGCAAAACCATCACTTTGGAAGTTGAGCCTTCT 215471 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | || ||| || ||| ||||||||||| || || || |||||| Sbjct 215472 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGACAAAGAAGGAATCCCACCAGATCAA 215531 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | |||||| | ||||| ||| | ||||| | | | | |||||||| Sbjct 215532 CAACGTTTGATTTTTGCTGGCAAACAATTGGAAGACGGGCGCACATTGTCTGATTATAAT 215591 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || ||||||||||||||| | ||||| || ||| | ||| | || || Sbjct 215592 ATACAAAAAGAATCTACATTGCATTTGGTATTACGTTTGCGTGGTGG 215638 >seq1190 Length=275307 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||| ||||| |||| || || | || || | || |||||| | Sbjct 186672 AATGCAGATTTTTGTCAAAACCCTAACGGGTAAGACCATCACTCTTGAGGTCGAGCCGTC 186731 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||| || || | |||||| |||||| ||||||||||| || || || ||||| Sbjct 186732 CGACACTATTGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCACCAGATCA 186791 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | |||||| || || || ||| | ||||||| | | | || ||||| || Sbjct 186792 ACAACGTTTGATTTTCGCTGGAAAACAATTGGAAGATGGCCGTACTCTCTCTGATTACAA 186851 Query 24170 CATTCAAAAAGAATCTAC 24187 |||||||||||||| || Sbjct 186852 TATTCAAAAAGAATCCAC 186869 >seq1304 Length=336898 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||||||| || | |||||| | ||||| ||| | | Sbjct 274399 ATGCAGATCTTCGTCAAAACTTTAACTGGTAAGACCATTACCTTGGAAGTTGAGCCTTCC 274340 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | ||||| || || ||||||||||| || || || |||||| Sbjct 274339 GACACCATTGAAAATGTCAAGGCCAAAATCCAAGACAAAGAAGGTATCCCCCCAGATCAA 274280 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | |||| | || || || ||| | ||||||| | | | | ||| || ||| Sbjct 274279 CAACGTTTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGCACCTTGTCCGACTACAAC 274220 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 || ||||| ||||| || | ||||| || Sbjct 274219 ATCCAAAAGGAATCCACTTTACATTTGGT 274191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429927024145515