Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1304 131 2e-25 seq964 113 4e-20 seq1348 95.1 1e-14 seq1190 84.2 2e-11 >seq1304 Length=336898 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || ||||||| || || |||||||| |||||||| ||| | Sbjct 274173 CCACCACGAAGACGGAGTACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCGGAC 274232 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || | || || || ||| |||| ||||| || || || || ||| Sbjct 274233 AAGGTGCGACCATCTTCCAATTGTTTACCAGCGAAGATCAAACGTTGTTGATCTGGGGGG 274292 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| |||||| ||||| | || | || |||| | ||| | Sbjct 274293 ATACCTTCTTTGTCTTGGATTTTGGCCTTGACATTTTCAATGGTGTCGGAAGGCTCAACT 274352 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||| ||||| |||| |||||| ||||| |||||||| Sbjct 274353 TCCAAGGTAATGGTCTTACCAGTTAAAGTTTTGACGAAGATCTGCAT 274399 >seq964 Length=291957 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||||||||| || || || | ||| || || ||||||||||| |||||| Sbjct 215866 CCACCACGCAAACGCAATACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAATCGGAT 215807 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || | ||| || || ||| | || |||||||| || || || || Sbjct 215806 AAAGTGCGGCCATCTTCCAACTGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGGGGA 215747 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| |||||| |||| | | | || | |||||| | | || | Sbjct 215746 ATACCTTCTTTGTCTTGGATTTT-AGCTTTAACATTTTCTATAGTATCCGAAGGTTCAAC 215688 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | |||| |||||||| |||| ||||| |||||||| |||||| Sbjct 215687 CTCCAATGTAATTGTTTTACCCGTTAATGTTTTAACGAAAATTTGCATG 215639 Score = 113 bits (124), Expect = 4e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 131003 ATGAGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAAT 131062 ||| ||| || || | ||| ||||| ||||| | ||| ||||||||||| |||||||| | Sbjct 217114 ATGCGCCTCCACGAAGACGTAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAGT 217055 Query 131063 CGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCG 131122 | || ||| || || || || || || || ||| |||| ||||| ||||| || | Sbjct 217054 CAGACAAGGTACGACCATCTTCCAGTTGTTTACCGGCGAAGATCAAACGTTGCTGATCTG 216995 Query 131123 GAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACT 131182 | || || ||||| || || |||||| ||| | | ||| | ||||||| | | Sbjct 216994 GGGGAATACCTTCCTTATCCTGGATTTTAGCCTTTACGTTCTCAATGGTATCGGAAGGTT 216935 Query 131183 CGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||| || | || | |||||| ||||| | ||||| ||||| || ||||| Sbjct 216934 CGACTTCCAAAGTGATGGTTTTGCCGGTCAAGGTTTTAACGAAGATTTGCAT 216883 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| |||||||| | || || ||||| || ||||||||||| Sbjct 216881 CCACCACGGAGACGCAATACTAAATGGAGAGTAGATTCCTTCTGGATGTTGTAATCCGAA 216822 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || | || || || || |||| ||||| || ||||| || || Sbjct 216821 AGGGTGCGTCCATCTTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGGTCTGGGGGA 216762 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| || || ||| || ||||| | || | ||||||| | || | Sbjct 216761 ATACCTTCCTTATCTTGGATCTTAGCCTTGACGTTTTCAATGGTATCGGAAGGTTCAACT 216702 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | |||||| ||||| | |||||| ||||| |||||||| Sbjct 216701 TCCAAAGTGATGGTTTTTCCGGTCAAAGTTTTCACGAAGATCTGCAT 216655 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||||||| | || ||||| | || || || ||||| || || ||||| Sbjct 215639 GCCACCACGCAAACGTAATACCAAATGCAATGTAGATTCTTTTTGTATATTATAATCAGA 215580 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| ||| || | || ||||| || | || ||||| || || || || || Sbjct 215579 CAATGTGCGCCCGTCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGG 215520 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGA 131185 ||||||||||||||| ||| ||| |||| | | | || | |||||| | | ||| | Sbjct 215519 GATTCCTTCTTTGTC-TTGAATTTTAGCTTTAACATTTTCAATAGTATCAGAAGGCTCAA 215461 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | |||||| || || | || || || || || |||||| Sbjct 215460 CTTCCAAAGTGATGGTTTTGCCAGTCAATGTCTTAACAAAGATTTGCATG 215411 >seq1348 Length=1847788 Score = 95.1 bits (104), Expect = 1e-14 Identities = 249/375 (66%), Gaps = 10/375 (3%) Strand=Plus/Plus Query 145617 TATTGACGGCGATCGACGCCAAATTACAAACTGCCGTCTCCTCGGCGTCGCTGTATTGTA 145676 |||| | ||| || || |||||||||||||| || |||| || | | | |||| || Sbjct 1699063 TATTAAGGGCAATGGAGGCCAAATTACAAACAGCTATCTCATCAGGGGCAGAATATTCTA 1699122 Query 145677 CGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCC 145736 | ||||| | ||| || ||||| || || ||||| || | |||||||| || ||||| | Sbjct 1699123 CAATCTCTGTGCATAAGTTGCTGCACTTAATGGTGCCAATGTTTTGCTGGTTGCTTTTGC 1699182 Query 145737 TGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGA 145796 |||||| || || ||||| | ||| || ||| || || || || || | || | | Sbjct 1699183 GGTTGCAAGCATCTTTGTACAACATATAGGGTGTACCGGTTTCAACTTGAGCTTCAATTA 1699242 Query 145797 TA--AAACGGTGCAAG-TCCTGCGCACGCACCTGCTGCTGGTAGC--GGCCCTCTTCTTC 145851 || |||| ||| |||| || || | ||| | || || |||| ||| Sbjct 1699243 TAGCAAAC---CAAAGAGCCTGAGCTTTGAC--GGTGCGATTGGCTTTTCCTTCTTTTTC 1699297 Query 145852 GTATTTCCTGTAGAGCTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTT 145911 || || | || | || || ||| | ||| | ||| ||| |||||||| || Sbjct 1699298 ATACTTGGTATACAATTCTTCGAACTCCTCACCCCAAACATCCTGCAGACCGGGACATTT 1699357 Query 145912 GTTGGGACACATCAGCGACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGG 145971 || |||||||| || ||||| | || || | | || || | ||||||||| || || Sbjct 1699358 GTGTGGACACATTAGGGACCAGTCACCATTTTCTTCCACACGTTTCATAAACAAGTCGGG 1699417 Query 145972 CACCCACAGCGCGTA 145986 | |||||| || || Sbjct 1699418 TATCCACAGAGCATA 1699432 >seq1190 Length=275307 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | |||| || || || | || || || |||||||| |||||||| Sbjct 186899 CCACCACGAAGGCGCAATACCAAGTGCAAAGTGGATTCTTTTTGAATATTGTAATCAGAG 186840 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || | || || || ||| | || ||||| || || || || || Sbjct 186839 AGAGTACGGCCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGTTGTTGATCTGGTGGA 186780 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTT-GAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||||||||| ||| | | |||| || | || | ||| |||| | ||||| Sbjct 186779 ATTCCTTCTTTGTCC-TGAATCTTGGCTTTGACATTTTCAATAGTGTCGGACGGCTCGAC 186721 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| ||||| ||||| ||||| || ||||||||||| Sbjct 186720 CTCAAGAGTGATGGTCTTACCCGTTAGGGTTTTGACAAAAATCTGCAT 186673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472002693025920