Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq964 136 3e-27 seq629 136 3e-27 seq1304 120 2e-22 seq1190 109 4e-19 seq1428 104 2e-17 >seq964 Length=291957 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | ||||||||| ||||| ||||| || || |||||||| || ||||| | Sbjct 215868 TACCACCACGCAAACGCAATACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAATCGG 215809 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | ||| || | || || || ||||| || || || || | || |||||||| | || Sbjct 215808 ATAAAGTGCGGCCATCTTCCAACTGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGGG 215749 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||||||||| ||||| || ||||| | | |||||| | ||||| Sbjct 215748 GAATACCTTCTTTGTCTTGGATTTTAGCTTTAACATTTTCTATAGTATCCGAAGGTTCAA 215689 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 | || |||||||| ||||||||||| || ||||| ||||| || |||||| Sbjct 215688 CCTCCAATGTAATTGTTTTACCCGTTAATGTTTTAACGAAAATTTGCATG 215639 Score = 132 bits (146), Expect = 3e-26 Identities = 169/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | |||||| | ||||| || ||||| || ||||||||||| ||||| ||| Sbjct 215410 CCACCACGCAAACGTAGAACCAAGTGGAGAGTAGATTCTTTTTGAATATTATAATCGGAC 215351 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 ||| ||| |||| || |||||||| |||||||| ||||| ||||||||||| | ||| Sbjct 215350 AAAGTGCGTCCGTCTTCCAATTGTTTACCGGCAAAAATTAGACGTTGTTGATCTGGGGGA 215291 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || || || || |||||| ||| ||||| | | ||||| | ||| || Sbjct 215290 ATACCCTCCTTATCTTGAATTTTAGCCTTAACATTTTCAATCGTATCCGAAGGTTCGACC 215231 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTTA 38323 || | || || || || || || || || |||||||| || ||||| ||||| Sbjct 215230 TCAAGGGTGATGGTCTTGCCAGTTAAAGTCTTCACGAAGATTTGCATTTTTTA 215178 Score = 127 bits (140), Expect = 1e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | |||||| || |||||||| | || || ||||| ||||| ||||||||| Sbjct 215638 CCACCACGCAAACGTAATACCAAATGCAATGTAGATTCTTTTTGTATATTATAATCAGAC 215579 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || || |||| || |||||||| || ||||| || | ||||||||||| | ||| Sbjct 215578 AATGTGCGCCCGTCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGG 215519 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||||| |||||| || ||||| | | |||||| | |||||| Sbjct 215518 ATTCCTTCTTTGTCTTGAATTTTAGCTTTAACATTTTCAATAGTATCAGAAGGCTCAACT 215459 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || || || ||||| || ||||| || || || || || |||||| Sbjct 215458 TCCAAAGTGATGGTTTTGCCAGTCAATGTCTTAACAAAGATTTGCATG 215411 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 ||| | ||||||||| || ||| ||||||||| || ||||| |||||||| ||| | Sbjct 217098 ACGTAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAGGTACGACC 217039 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 || || | |||||| ||||| || || | ||||| ||||| | ||| | ||||| || Sbjct 217038 ATCTTCCAGTTGTTTACCGGCGAAGATCAAACGTTGCTGATCTGGGGGAATACCTTCCTT 216979 Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281 ||| ||||| ||| || |||| | ||||| | ||| ||||| || || || Sbjct 216978 ATCCTGGATTTTAGCCTTTACGTTCTCAATGGTATCGGAAGGTTCGACTTCCAAAGTGAT 216919 Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| || ||||||||||| ||||| || ||||| Sbjct 216918 GGTTTTGCCGGTCAAGGTTTTAACGAAGATTTGCAT 216883 Score = 116 bits (128), Expect = 2e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | |||||| || ||||| ||||| ||||| || || |||||||| | Sbjct 216883 TACCACCACGGAGACGCAATACTAAATGGAGAGTAGATTCCTTCTGGATGTTGTAATCCG 216824 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | ||| | || || |||||||| |||||||| || | |||||||| || | || Sbjct 216823 AAAGGGTGCGTCCATCTTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGGTCTGGGG 216764 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||| || || || || ||| || || | | ||||| | ||||| Sbjct 216763 GAATACCTTCCTTATCTTGGATCTTAGCCTTGACGTTTTCAATGGTATCGGAAGGTTCAA 216704 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || || || ||||| || ||||| ||||||||||| |||||||| Sbjct 216703 CTTCCAAAGTGATGGTTTTTCCGGTCAAAGTTTTCACGAAGATCTGCAT 216655 >seq629 Length=385807 Score = 136 bits (150), Expect = 3e-27 Identities = 150/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 6174 AACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCC 6233 || |||||||| ||||| | ||| ||||| ||||| |||||||| || || ||| Sbjct 238880 AATGTAAATCGCAATGTCACTGACATTTTCTATCGCTATAAAATGCCACGTATACAGGCC 238939 Query 6234 AAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCT 6293 || || ||||| || || || || |||||||| ||||| || || ||| |||| || || Sbjct 238940 AAAGTGGAGGGCAAAGGTAATGGCATTAAAACGGTCATAGTTAATATGGCTGAGGTAGCC 238999 Query 6294 AAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCT 6353 | || |||| || ||||||||||| || || || ||||| || || ||||| || ||| Sbjct 239000 AGAGCTATCGGCCGTCCTGCCACCTATCCAACCAAGTATTTTGGTTGTGAACTAGGTGCT 239059 Query 6354 CAGACGCAGTTTGATCACAA 6373 || || || |||||| |||| Sbjct 239060 CAAACTCAATTTGATTACAA 239079 Score = 84.2 bits (92), Expect = 1e-11 Identities = 177/259 (68%), Gaps = 4/259 (2%) Strand=Plus/Plus Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434 || || || ||||| || || || || ||| | ||||||| || || || | | ||| Sbjct 239156 AATGAACGTTTCATTGTGAATGGCTCCCATGATGCTGCCAAACTACAAGATCTTTTAGAC 239215 Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATT 6494 || || || || || ||||| |||| | ||||||||||| || || || || || | | Sbjct 239216 GGTTTCATCCGTAAATTTGTCTTGTGCCCCGAATGCGATAATCCCGAAACTGATCTCACT 239275 Query 6495 GTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAAG 6554 || || | || | | || || |||||| ||||| || ||||||| |||||| Sbjct 239276 GTTTCGGCTAAAAATCAAACTATTTCTCAGTCATGCAAGGCTTGCGGTTTTCATGGCCTT 239335 Query 6555 CTGGA-TTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCCACCTAAAGACCC 6613 || | ||| | || || | || || ||||| | ||||||||||| ||| | || Sbjct 239336 CTCAAGGTTAAC-CATAAGGTTAATACATTCATTTTAAAGAATCCTCCCACTATTAATCC 239394 Query 6614 TAGC-ACGCAGGGTTCTTC 6631 ||| | ||||||||||| Sbjct 239395 -AGCTGCTCAGGGTTCTTC 239412 >seq1304 Length=336898 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | |||||||| | |||| |||||||| || ||||| || | Sbjct 274171 TACCACCACGAAGACGGAGTACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCGG 274230 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| || | || || |||||||| || || || || | ||||||||||| | || Sbjct 274231 ACAAGGTGCGACCATCTTCCAATTGTTTACCAGCGAAGATCAAACGTTGTTGATCTGGGG 274290 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||||||||| ||||| ||| ||||| | | || || | |||| Sbjct 274291 GGATACCTTCTTTGTCTTGGATTTTGGCCTTGACATTTTCAATGGTGTCGGAAGGCTCAA 274350 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || ||||| || ||||| || || ||||| ||||| |||||||| Sbjct 274351 CTTCCAAGGTAATGGTCTTACCAGTTAAAGTTTTGACGAAGATCTGCAT 274399 >seq1190 Length=275307 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | | ||||| ||||| || | |||| || |||||||||||||||||||| Sbjct 186900 ACCACCACGAAGGCGCAATACCAAGTGCAAAGTGGATTCTTTTTGAATATTGTAATCAGA 186841 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | | ||| | || || ||||||||||| || || || | ||||||||||| | || Sbjct 186840 GAGAGTACGGCCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGTTGTTGATCTGGTGG 186781 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | |||||||||||| ||| || || ||||| | | ||| || || || Sbjct 186780 AATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCAATAGTGTCGGACGGCTCGAC 186721 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || || |||||||| | |||||| || || |||||||| Sbjct 186720 CTCAAGAGTGATGGTCTTACCCGTTAGGGTTTTGACAAAAATCTGCAT 186673 >seq1428 Length=188971 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||| |||| |||||||||||||||||||||| | Sbjct 5398 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCTTCACAGTACTTGTTCGCTATCGGTCTCTC 5339 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 5338 GCAAATATTTAGCTTTA 5322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334940207244503