Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1348 594 6e-165 seq869 297 2e-75 seq1394 114 2e-20 seq583 113 6e-20 >seq1348 Length=1847788 Score = 594 bits (658), Expect = 6e-165 Identities = 1505/2268 (66%), Gaps = 32/2268 (1%) Strand=Plus/Plus Query 61850 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 61909 || |||||||| | | || || ||||| || | | ||| ||||| || || |||| Sbjct 1698168 GTAAATTGAATAGCATTGGCGGCTGGTTTTGTTCTCAAATAATACATGCCGGTCTTTAAG 1698227 Query 61910 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 61969 || |||| | || ||||| || || | |||| ||| | || || || | | Sbjct 1698228 CCTGATTTCCAGGCATAGAAATGTATGGAGGTCAATTTGCCGTAATTTGGCTCGGCCACA 1698287 Query 61970 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATA 62029 || ||||| | |||||||||||||| ||||| || || | ||| |||||||||| ||| Sbjct 1698288 TGTATATTGAACGATTGACTTTGATCTATGAAAGCGCCACGGTCGGCAGCCATTTGTATG 1698347 Query 62030 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAAG 62088 | ||||| | ||| ||||||| ||||| || | || | || ||| || || | Sbjct 1698348 GTGGTCTTAACGGAAATCTCCCAAACTGTTTTGTATAGATCACGTA-TATGTTTGGGTAT 1698406 Query 62089 GT-TTGTATTC--TGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATT 62145 | || ||| || ||||| || | || | ||||| |||| || || ||||||| Sbjct 1698407 TTCTTCTATGGCTTGTATGGAGCCGCGATTGGAAATAATTTTATTTTTCATTTCATCATC 1698466 Query 62146 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 62205 |||||| | ||||||||| || |||| | ||| |||| || || | |||||||| Sbjct 1698467 CCATAAATCAAGTTCGGTTAAATCTTTAAGCAAATGATGATTGACAACATTGAATTCTCC 1698526 Query 62206 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCC 62265 ||||| || | | ||||||||||||| ||| |||||||| | || ||||| || || Sbjct 1698527 CGACAAAACACGTCTAGTGTAAATATTAGAGGTGTACGGTTCAAAGGATTCATTGTTGCC 1698586 Query 62266 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 62325 | |||||| || || || || || ||||| || || | | ||| ||| | | ||| Sbjct 1698587 TAGAATTTGTGCGGTCGAAGCTGTGGGCATTGGGGCTAATAGCAAAGAATTGCGTACACC 1698646 Query 62326 GTATGTT--CTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACN 62383 ||||| |||||||| || || | | ||| ||||| | || | ||| Sbjct 1698647 --ATGTTGACTGATTTTCTCCTTCAACTCTGACCAGTTCCACAAGTCTGTGGGTGTTTTA 1698704 Query 62384 NNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTA 62442 |||||| ||||| ||||| | | || | || ||| || || || Sbjct 1698705 TTCCACATATCATATTGTAGTATACCCTTACTTACTGGAC-AGCCGGGATAAGTTTCATA 1698763 Query 62443 TGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTC 62502 || || || || || || | ||||||||| || || || || || |||||||| ||||| Sbjct 1698764 TGTGCCATCTTTTTCGGCCAATTCACAACTAGCTTCCAAAGCGCCATAATAAATAGTTTC 1698823 Query 62503 GAAGATCTTCTTATTTAG--ATCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAGA 62560 ||| |||| | ||||| | ||| || || || ||| | || ||| | | | Sbjct 1698824 GAAAATCTGTTGATTTAACAAAAATGCCTTTTCA--CTCTCATAGGGGTAACGCATTAAA 1698881 Query 62561 ATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAG 62620 || || | || || || || |||||||| ||||| ||||| | ||| | | ||| || Sbjct 1698882 ATCAAAGTATCGGCAAAACCCTGAACACCTATACCAATAGGACGATGACGCAAATTGGAC 1698941 Query 62621 ATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACA 62680 || |||||| || | |||||| | || || || || ||||| |||||||| || | Sbjct 1698942 TTTCTAGCTTCGGGCAACGGATAAAAGTTGATGTCGATGATTTTGTTGAGATTCTTGGTA 1699001 Query 62681 ATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA---TTACAAAC 62737 || ||||| |||| |||| ||| |||||||| | ||| | |||||| Sbjct 1699002 ATAACTTTTGTAACATTTTTCAATTTTTTGAAATCAAAGGTCTTTTCTGGCGTGACAAAC 1699061 Query 62738 ATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGT 62797 || || | |||| || |||| ||||||||| |||| ||||| || | | ||||| | Sbjct 1699062 ATATTAAGGGCAATGGAGGCCAAATTACAAACAGCTATCTCATCAGGGGCAGAATATTCT 1699121 Query 62798 ATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTT 62857 | ||||| ||||| | || || ||||| ||||| || | ||||| || || || || Sbjct 1699122 ACAATCTCTGTGCATAAGTTGCTGCACTTAATGGTGCCAATGTTTTGCTGGTTGCTTTTG 1699181 Query 62858 TTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATA 62917 ||| || ||||| || || | || | || ||||| ||||||| |||| ||| || Sbjct 1699182 CGGTTGCAAGCATCTTTGTACAACATATAGGGTGTACCGGTTTCAACTTGAGCTTCAATT 1699241 Query 62918 ATCGCTTTCCAGACGACTCGAGCCTTTATTATA-GATTTGTATCTCTTTTCTCTTTCGTA 62976 || || ||| | | |||| || | | |||| | | || || || |||| || Sbjct 1699242 ATAGCAAACCAAAGAGCCTGAGCTTTGACGGTGCGATTGGCTTTTCCTT-CTTTTTCATA 1699300 Query 62977 TAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATC 63036 ||||||||| ||||||||| || |||||||||| | ||| || ||||||| | Sbjct 1699301 CTTGGTATACAATTCTTCGAACTCCTCACCCCAAACATCCTGCAGACCGGGACATTTGTG 1699360 Query 63037 CGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAAT 63096 |||||||| | ||||| || || | || | ||| ||||||||||| | || || || Sbjct 1699361 TGGACACATTAGGGACCAGTCACCATTTTCTTCCACACGTTTCATAAACAAGTCGGGTAT 1699420 Query 63097 CCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAA 63155 ||| ||||| ||| || |||||||||| |||||| || || || || ||||| || || | Sbjct 1699421 CCACAGAGC-ATAGAAAAGATCTCTGGCTCTATGCTCTTCCTTGCCGGTATTTTTCTTTA 1699479 Query 63156 GATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAG 63215 ||| | || | | |||||| |||||||| || ||||| || || || | | |||| Sbjct 1699480 AATCCAAAAATTCAAAAATATCTGAATGCCAAGGCTCCAAATAAATAGCAAAGGCACCAG 1699539 Query 63216 GCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTG 63275 | |||||| || |||||||| | || | || || ||| | || || | ||||| Sbjct 1699540 GGCGTTTGCCACCACCCTGATCAACATAGCGGGCTACATTGTTAAACACCCTGAGCATTG 1699599 Query 63276 GAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAAT-- 63333 | | | |||||| || || || || || || || | | || |||| | || Sbjct 1699600 GTACCAGACCATTTGAGGTGCCGTTTGTGCCGTCAATGGAAGTGCCCTTGGCCCTTATGC 1699659 Query 63334 ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA 63393 | | || | || || || || || ||| ||| || || | || ||| ||| | Sbjct 1699660 AGT-GTACGT-TTATGCCAATACCACCCGCCGATTTGGATATCATGGCACATTGTTCCAC 1699717 Query 63394 CGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACAT 63453 | | | || ||||| ||| ||| ||| |||| | | || ||||| |||| Sbjct 1699718 TGACTTGAAAATACCCTCAATAGAATCGGCCACCATGGTCAATAAGAAACACGACGACAA 1699777 Query 63454 TTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTC 63513 || | | | | || | || || || ||||| || || || ||||| | || Sbjct 1699778 CTGCGGTCTATTGGTAGCAGCCGCGAACAATGTAGGCGACGCATGGGTAAAATAACGCTC 1699837 Query 63514 AGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGC 63573 ||| | | ||| || || |||||||| || || ||||| | ||| || |||| || Sbjct 1699838 AGACAACAAATTATAAGTTTCAATAGCCGAATCAATATCGTCTCCATGTATACCTATAGC 1699897 Query 63574 GACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTA 63633 || | ||||||||| ||||| ||||| ||||| ||||| || ||||| | ||| || Sbjct 1699898 TACTCTCATTAACATATGCTGTGGTCTCTCAACAATCTTACCATTCATTTTTAGCAAATA 1699957 Query 63634 GGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 ||| | |||| ||||| || || || |||||||| |||||| || || |||||||| Sbjct 1699958 AGATCTCTCCAGTGTTTTGAAGCCGAAGTAGTTGTAGCCAAAGTCACGATCATAAATAAT 1700017 Query 63694 AACCGAGTTGAGTTTATCCTTATATTTGTTAACTACAT--CCATGGTAATACTTGAAATA 63751 ||| || | || || ||| | ||||||| |||||| | ||||| Sbjct 1700018 TGACGAATTCAAACGTTCTGCATTTTTCTGCACTACATTGTAATGGTATT--CGGAAATC 1700075 Query 63752 ATAGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCA 63811 | || | || ||| | | ||| ||| | | | | ||| || || || Sbjct 1700076 AATGGCGATGGTCGCCCCGTCTCTTTATTAACAAAATGATACAGATCACTTATAACCTCT 1700135 Query 63812 CTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATG 63871 |||| |||||| ||||||||||| | ||| || || || || | ||| || | ||| Sbjct 1700136 GAGAATACTTTTTTCGTTTCTTTGTGCAAATTGGAGACAGCAATGCGAGCTGCCAATATG 1700195 Query 63872 GCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAAT 63931 |||||||| ||| | |||||| | || ||||| | || || |||| | |||||| | Sbjct 1700196 GCATAATCTCCATGATTTGTAGTTAATGTAGCTGCGGTCTCTGCCGCCAAATTGTCCAGT 1700255 Query 63932 TCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGA 63991 ||| || || |||||| || | || | || ||||||| | || | ||| Sbjct 1700256 TCTTGTGTAGTAACACCACAGTAAAGGCCATTAATTACCTTCAGTGTAATGGCCACTGGA 1700315 Query 63992 TCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGATGTGATTTTATCA 64051 || | | ||| |||| ||||||||||||| ||| || || ||||| |||||||| Sbjct 1700316 TCAACAAAATCCATGTTCAAGCCATAACATAGCTTTTGTATGCGTGATGTTATTTTATCG 1700375 Query 64052 AACATG-ACATTTTCCTTGTATCCATTTCGTTTAATGACAAACATTTT 64098 || ||| || | ||||||| ||||| |||||||| ||||| | ||| Sbjct 1700376 AA-ATGTACCTCTTCCTTGCGTCCATCTCGTTTAAGAACAAATAATTT 1700422 >seq869 Length=1271022 Score = 297 bits (328), Expect = 2e-75 Identities = 508/727 (70%), Gaps = 15/727 (2%) Strand=Plus/Minus Query 32476 CCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAAT 32535 ||||||| | ||| | ||| || ||||||||||||||| ||| | || ||||| Sbjct 484158 CCAATTCCACCAGCAAACGATCGGCCACAAATTCTATATATTCCGACATTAATTTACAAT 484099 Query 32536 TCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCG 32595 |||| ||||| | || || || | ||| | ||||| ||||| |||||||| |||| Sbjct 484098 TCATGCCTATCAAATTGACGGGCAAAGCATCTGTAAGGAATTCCTGTTCAATTTTCACCG 484039 Query 32596 CGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACA 32655 | || || ||||| | | | | ||| ||| || | | | ||||||||||||| Sbjct 484038 CTTCAGTGATAATTTCAATAATTCTCTCTCGACTGGGACGTTGTACCAAATGTTTAAACA 483979 Query 32656 TCAA-ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 32714 | || ||| || ||||| || |||| |||||| || | || || || ||||| || Sbjct 483978 TTAATACA-GCAAAATCACAATGTAAACCCTCATCACGTGATATCAACTCATTGGAGAAT 483920 Query 32715 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAA 32774 || || || ||||| || ||||| || || |||||||| ||||| ||||| ||| | Sbjct 483919 GTAAGACCAGGCATAAGACCACGTTTCTTTAGCCAAAAGATGGAAGCAAAACTGCCACTA 483860 Query 32775 AAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCTGTC 32833 |||||||| || ||||| || ||||| ||||||| | || ||| || || | | || Sbjct 483859 AAGAAAATACCCTCTACAGCAGCAAAAGCAATAATACGTTCACCAAAATTTGCTGATTTC 483800 Query 32834 --ATGTATCCA--CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 32889 | ||||| | ||| ||||||||||||| || ||| ||||| || || | Sbjct 483799 GAAGAAATCCAAGCCATTG--CCCAATCGGCCTTACGCTTAACAGCTGGCATAGTTTCAA 483742 Query 32890 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 32949 |||||||||||||||| | | | || ||| |||| ||| ||||||| | || || Sbjct 483741 TAGCATTAAAGAGATAATCACGCTGTTCACGATCCTTAATATAACTATCAATTAGAATAC 483682 Query 32950 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCT 33009 |||||||||| || || | ||||| ||||| |||||||| || ||||| || | |||| Sbjct 483681 TATACATTTCAGAGTGTACATTTTCCATGGCAATTTGAAAGCCATAGAAACAGCGTGCCT 483622 Query 33010 CGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCAC 33069 | |||| ||||||||| | | || ||||| | | ||||||||| || || || || Sbjct 483621 CTGTAACTTGTACTTCTTGAGAGAAACGTTCGACAAGATTTTCATTGACAATGCCATCGG 483562 Query 33070 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT---ATTTTTCGTCTGGTGTTAGTT 33126 || || || || || | |||||| || |||| | | ||| |||| ||| Sbjct 483561 AAGCGGCGAAGAAAGCAAGAACATGTGAAATGAAATGACGCTCATTGTC-GGTG--AGTC 483505 Query 33127 TATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCT 33186 | | ||| || | |||||||||| | ||| |||||||| || |||||||| || || | Sbjct 483504 TTTCCCAGTCGGAGTTATCTTTAGAAAGATCTACTTCTTCTACCGTCCAAAAAGAAGCTT 483445 Query 33187 CTGCCTT 33193 | ||||| Sbjct 483444 CGGCCTT 483438 >seq1394 Length=309634 Score = 114 bits (126), Expect = 2e-20 Identities = 90/108 (83%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 27511 AATACCTAATTCCTTGACCTGAGTTAATGATCTCCAATCCATATTAGCGCTTCCTAAATA 27570 |||||||||||| || ||||| ||||| |||||||| |||||||| || || || ||||| Sbjct 287882 AATACCTAATTCTTTAACCTGCGTTAAAGATCTCCAGTCCATATTGGCACTGCCCAAATA 287941 Query 27571 AATATGTGTATTATCAGATATCCAAAATTTTGTATGAAGAACTCCTCC 27618 ||||||| | || ||||| ||||| ||||||||||| | ||| || || Sbjct 287942 AATATGTTTTTTGTCAGAAATCCAGAATTTTGTATGTAAAACACCACC 287989 >seq583 Length=2816 Score = 113 bits (124), Expect = 6e-20 Identities = 312/473 (66%), Gaps = 4/473 (1%) Strand=Plus/Minus Query 32345 GTCTTCTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATT 32404 ||| | || || |||||| || || ||||| |||| ||||| || || || || || Sbjct 641 GTCCTGTTTAGCCATAACACCGGCCTTCTGGTAGTCACTAACACGCTTCTCAAAGAAGTT 582 Query 32405 AGTTTTACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAt 32464 ||| ||||| | || || ||||| |||||||||||||| ||||||| ||| || ||||| Sbjct 581 AGTCTTACCAGCCAAAGAGATATTCTCCATGAAATCGAAGGGATTGGCAACCTTGTAAAT 522 Query 32465 ttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCAT 32524 || | | ||||| || || || | || || || | || | || ||||| Sbjct 521 CTTCTCATGGCCCAAGGCAACCATTAAACGGTCAGCTACGTACTCAACGTACTGATTCAT 462 Query 32525 CATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACA-GTAAGAAATTCTTGTT 32583 || ||| |||||| || | | | ||| || | ||| || | ||| | ||||||| Sbjct 461 CAAATCAGCATTCATACCAAGCAAGTGAACAGGCAAAGCATCACGGAAG-TACTCTTGTT 403 Query 32584 CAATAGAGACCGCGTCTGTTATAATA-GATCTTACTGTTTCTTCACTCGGTGGATACAAT 32642 ||||| || || || || |||||| | || | | || ||| || | | | | Sbjct 402 CAATATCAACAGCCTCGGTCATAATACGCTC-AATAATCTCACGACTGGGACGGTTCTCT 344 Query 32643 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAAT 32702 || || || | | ||| |||||||| ||| | |||||| ||||| ||| | Sbjct 343 AAGTGAGAGAAGAGAAGACAAGCGAAATCAGTGTGCATACCCTCATCTCTGGAAATAAGC 284 Query 32703 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA 32762 || || || || | || ||||| | ||||||||| || | ||| || |||| || Sbjct 283 TCATTACTGAATGTTAAACCAGGCATCAAGCCACGCTTCTTCAACCAGAAAATGGCAGCG 224 Query 32763 AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTC 32815 ||||| ||| ||||| | || || || || || || || | | |||||| Sbjct 223 AATGAACCACTGAAGAAGACACCCTCGACAGCAGCGAAAGCGACTAATCTCTC 171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633618432354800