Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq964 149 5e-31 seq1190 140 3e-28 seq1304 122 8e-23 >seq964 Length=291957 Score = 149 bits (164), Expect = 5e-31 Identities = 162/212 (76%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| ||||| || ||| ||||||| | ||||| ||| | ||| Sbjct 215412 ATGCAAATCTTTGTTAAGACATTGACTGGCAAAACCATCACTTTGGAAGTTGAGCCTTCT 215471 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || ||||| || | || |||| |||| ||| ||||||||||| || ||||| || Sbjct 215472 GATACTATTGAA--AATGTTAAAGCTAAAATTCAA-GACAAAGAAGGAATCCCACCAGAT 215528 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| || | |||||||| ||||||||||| ||||| | ||||| || ||||| Sbjct 215529 CAACAACGTTTGATTTTTGCTGGCAAACAATTGGAAGACGGGCGCACATTGTCTGATTAT 215588 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGT 25207 ||||| ||||||||||| || | ||||| || Sbjct 215589 AATATACAAAAAGAATCTACATTGCATTTGGT 215620 Score = 125 bits (138), Expect = 6e-24 Identities = 160/218 (73%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 || ||||||||| || || |||||||| || || || ||||||| | || || || | Sbjct 215180 AAAAATGCAAATCTTCGTGAAGACTTTAACTGGCAAGACCATCACCCTTGAGGTCGAACC 215239 Query 25055 GTCTGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 || || || || || | ||| | |||| ||| || || || || ||||| || | Sbjct 215240 TTCGGATACGATTGAAAATGTTAAGGCTAAAATTCAA-GATAAGGAGGGTATTCCCCCAG 215298 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | ||||| || | ||||||||||| |||||||| ||||| | |||||| || ||||| Sbjct 215299 ATCAACAACGTCTAATTTTTGCCGGTAAACAATTGGAAGACGGACGCACTTTGTCCGATT 215358 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 | ||||||||||||||||| || || || || || ||| Sbjct 215359 ATAATATTCAAAAAGAATCTACTCTCCACTTGGTTCTA 215396 Score = 118 bits (130), Expect = 9e-22 Identities = 155/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || || || |||||| | || ||| | || || || | || Sbjct 215640 ATGCAAATTTTCGTTAAAACATTAACGGGTAAAACAATTACATTGGAGGTTGAACCTTCG 215699 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || ||||| || | || |||| |||| || ||||||||||| ||||| || || Sbjct 215700 GATACTATAGAA--AATGTTAAAGCTAAAATCCAA-GACAAAGAAGGTATTCCCCCAGAT 215756 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||||| | ||||| || || ||||| || ||||||| |||||| | |||||| Sbjct 215757 CAACAGCGTTTGATTTTCGCTGGTAAACAGTTGGAAGATGGCCGCACTTTATCCGATTAT 215816 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGT 25207 || |||||||||||||| || || || || || Sbjct 215817 AACATTCAAAAAGAATCTACCCTTCACTTGGT 215848 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || ||||||||||| ||| ||||||| | ||||| || | || Sbjct 216655 ATGCAGATCTTCGTGAAAACTTTGACCGGAAAAACCATCACTTTGGAAGTTGAACCTTCC 216714 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || || | ||| || ||| || || ||||| ||||| || |||||| Sbjct 216715 GATACCATTGAAAACGTCAAGGCTAAGATCCAAGATAAGGAAGGTATTCCCCCAGACCAA 216774 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || |||||||| |||||||| ||||||| ||||| | |||||||| Sbjct 216775 CAACGTTTGATCTTTGCCGGTAAACAATTGGAAGATGGACGCACCCTTTCGGATTACAAC 216834 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGT 25207 || || || ||||| || || |||||||| Sbjct 216835 ATCCAGAAGGAATCTACTCTCCATTTAGT 216863 >seq1190 Length=275307 Score = 140 bits (154), Expect = 3e-28 Identities = 154/203 (76%), Gaps = 8/203 (4%) Strand=Plus/Plus Query 24997 CAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGT 25056 ||||||| || ||||| || || | || ||||| ||||||| | || || ||| ||| Sbjct 186671 CAATGCAGATTTTTGTCAAAACCCTAACGGGTAAGACCATCACTCTTGAGGTCGAGCCGT 186730 Query 25057 CTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112 | |||||||| || |||| |||| || | ||| ||||||||||| |||||||| Sbjct 186731 CCGACACTATTGAAAATGTCA---AAGCCAAGATTCAG-GACAAAGAAGGAATTCCACCA 186786 Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172 || ||||| || | ||||| || || |||||||| ||||||| || ||| | ||| Sbjct 186787 GATCAACAACGTTTGATTTTCGCTGGAAAACAATTGGAAGATGGCCGTACTCTCTCTGAT 186846 Query 25173 TACAATATTCAAAAAGAATCCAC 25195 ||||||||||||||||||||||| Sbjct 186847 TACAATATTCAAAAAGAATCCAC 186869 >seq1304 Length=336898 Score = 122 bits (134), Expect = 8e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || ||||| || ||||| |||| || | ||||| ||| | || Sbjct 274399 ATGCAGATCTTCGTCAAAACTTTAACTGGTAAGACCATTACCTTGGAAGTTGAGCCTTCC 274340 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| |||||| ||||||||||| || || || || ||| Sbjct 274339 GACACCATTGAAAATGTCAAGGCCAAAATCCAAGACAAAGAAGGTATCCCCCCAGATCAA 274280 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || || || || |||||||| ||||||| |||||| || ||| ||||| Sbjct 274279 CAACGTTTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGCACCTTGTCCGACTACAAC 274220 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| |||||||| ||||||| || || Sbjct 274219 ATCCAAAAGGAATCCACTTTACATTTGGTACT 274188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433318953330095