Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_008515.1 Length=165890 Score E Sequences producing significant alignments: (Bits) Value seq1596 107 2e-18 seq253 98.7 1e-15 seq613 87.8 2e-12 >seq1596 Length=248270 Score = 107 bits (118), Expect = 2e-18 Identities = 89/109 (82%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 60615 ATTACAAACTCTCGGTGAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAG 60674 |||||| | | |||||| ||||||| |||||||| |||||||||| |||||||| Sbjct 48936 ATTACAGAGTACTGGTGAAAGTACGAGTAATAACGTCTTGCTGCTGTTCTTTAGTCAGAG 48877 Query 60675 AGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATA 60723 ||||||| || || |||||||| ||||||||||| ||||| || ||||| Sbjct 48876 AGTTAAAACGCACCGCATAACCCGATACACGGATAGTCAGTTGTGGATA 48828 >seq253 Length=360942 Score = 98.7 bits (108), Expect = 1e-15 Identities = 516/810 (64%), Gaps = 29/810 (4%) Strand=Plus/Plus Query 41237 GCAATGCGAGGAAGATTCAGTGTTACAACACCAAGATTATTACGTCCATCAAGAATTTCA 41296 ||||| || || || || || | | ||||| | ||||||||| |||||| |||||| Sbjct 104859 GCAATACGCGGCAGGTTAAGGCTAATGACACCTAAATTATTACGGCCATCATGAATTTGT 104918 Query 41297 TTACCAGTCGAATCTTTCCATACGCTCAAGAAACTACGGCAACCCATTGGAGAAACAGGA 41356 | ||| | |||| | || | ||||| || ||||| |||||||| | Sbjct 104919 TGGCCATTT---TCTTCGTAGACACCTAAGAAGCTGCGGCAGCCCATTGGCGTTT----- 104970 Query 41357 ATAGATGAACCGGTGATAGCTTTA--TTATTCTTAACTGAAATAATATCAGGATACATCC 41414 || | || || || | | | | || || || | || || || |||||||| | Sbjct 104971 -TAAACGAGCCCGTTACATCGACAACTTTGTCATAGTTTAAG--ATGTCGGGATACATGC 105027 Query 41415 TTTTGCTTGCACACTCTAGAGCAAGCTGCTTAATATCATAGTTCGGATCGTCTTTATAAA 41474 |||||| |||||||||| || | ||| || ||||||||||| ||||| | | | Sbjct 105028 GTTTGCTCGCACACTCTAATGCTAACTGTTTGATATCATAGTTAGGATCACCATATTGGT 105087 Query 41475 GATTAACGCCTTCTTCAACGAACATA-ACAAGTTTAGGAAAAATAGGAGTTATCCCATCA 41533 |||||| ||||| || || | || | || | |||||| |||| | |||| | | || Sbjct 105088 GATTAAGGCCTTTTTTAA-TAGCAAACACTAATTTAGGGAAAACGGCAGTTTTACGATTT 105146 Query 41534 CGACCAAGACCTTTAATACGATTTTTCAAAATTGCTTTCTGAATCATTCGTTCAGTCCAG 41593 ||| | || ||||| ||||| | ||| | || || |||| ||| | || | Sbjct 105147 TTACCTAACCCAGCGATACGGTTTTTTAGAATGGATTGTTGGATCAAGCGTGC-TTCTTG 105205 Query 41594 TCA-GTTCCCGTACCAAATGTAATTGTTACAAAAGGAGTCTGTCCGTTTGAACTAAAGAG 41652 | || || |||||| || ||||| || || || || || || | || || Sbjct 105206 CGATGTGCCTAAACCAAACCCAAAGGTTACGAAGGGGGTTTGACCATTGGCGGTATGCAG 105265 Query 41653 AGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTATACGTCTTTTTCTGTTTTAGA 41712 || || ||||| |||||| | |||||| |||||||| |||||||| |||| Sbjct 105266 TGTGTTCACTTCGTATTCAAGGGATTGGAAGGCATCGTAACATTCTTTTTCGGTTTGGCT 105325 Query 41713 TTGGGCATA---ATTCAGTGCATCGGCGATTTGCCATTTTTCTGCGTCCTCGATATGTTT 41769 | ||||| ||| ||||| | || ||| || || | | |||||| Sbjct 105326 ATCAGCATAGCCTTTC---GCATCTTCAATGCCCCAATTGATCGCTGTTTTTAGATGTTT 105382 Query 41770 TGCATAGGTGCGTTTAACATAAGGAGAAAGTACTTTATCTACATTCG--CAAAAGTCGTT 41827 | ||||| || | |||||||||| ||| | || ||| || || | || || Sbjct 105383 TTCATAGCTGATGTGGACATAAGGAGCAAGGATTTCATC--AATGCGGTTGATGGTGGTG 105440 Query 41828 CCGCCGTATTGGTGAGAAGCAACCTGTGCGGTAATTTGTGCCATAATTGCAGTAGCAACG 41887 || || || || ||| || || ||| ||||||| || | | ||| || ||| | Sbjct 105441 CCACCATAAATATGGCTAGCTACTTGAGCGATAATTTGGGCTGTCACTGCGGTGGCAGTG 105500 Query 41888 CCAATTGATTTAGGAGTTTCAATCTGCGCATTACCAAGCTTAAATCCGTTCTCAAGCATT 41947 |||||||||||||| || || | |||||||| | ||||| || || | ||| Sbjct 105501 GAAATTGATTTAGGAGGCTCTATTTCGGCATTACCCATTTTAAACCCATTAGTTAACATG 105560 Query 41948 CCTTTTAAATCTACTAAACA-ACAATTAGTAAATGGAAGAGCAGGGGAATAATCAATATC 42006 |||| | ||| | | | || ||| ||| | || | | || | |||||| | ||| Sbjct 105561 CCTTCAAGATC-AATCAGCATACAGTTAAACATGGGGAAAAATGGCGCATAATCGAGATC 105619 Query 42007 ATGAAAATGAATAATTCCGCTTTCATGCGC 42036 ||| ||||||| |||| ||| || || Sbjct 105620 GTGATAATGAATTTCACCGCGTTCGTGAGC 105649 >seq613 Length=31296 Score = 87.8 bits (96), Expect = 2e-12 Identities = 90/113 (80%), Gaps = 6/113 (5%) Strand=Plus/Minus Query 68555 GCGCTCTACCAAACTGAGCTACACGGAGTAAATTAAATTGGAGCGGATAATGAGAATCGA 68614 |||||||||||| |||||||| | || | || ||||||||| | | ||||||| Sbjct 4255 GCGCTCTACCAA-CTGAGCTATATC-AGCACATC---TTGGAGCGGGCAGCGGGAATCGA 4201 Query 68615 ACTCACATCATCAGATTGGAAGTCTGAGGTAAT-GCCATTATACGATATCCGC 68666 || | ||||||||| ||||||| |||||||||| ||||||||||||| |||| Sbjct 4200 ACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGCCATTATACGATGCCCGC 4148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530708635958000