Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1348 293 2e-74 seq964 168 6e-37 seq1190 154 1e-32 seq1304 145 6e-30 seq869 89.7 4e-13 >seq1348 Length=1847788 Score = 293 bits (324), Expect = 2e-74 Identities = 1022/1570 (65%), Gaps = 54/1570 (3%) Strand=Plus/Plus Query 128779 TTGTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATGCCT 128838 || || |||||||||| |||||| | || || || || || | |||||| |||||||| Sbjct 1698159 TTATCTACGGTAAATTGAATAGCATTGGCGGCTGGTTTTGTTCTCAAATAATACATGCCG 1698218 Query 128839 GTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGTGGGT 128898 || || || || |||||| | | | || || | |||||| |||| | || Sbjct 1698219 GTCTTTAAGCCTGATTTCCAGGCATAGAAATGTATGGAGGTCAATTTGCCGTAATTTGGC 1698278 Query 128899 TGACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGCC 128958 | || | ||||| || |||||||||||||| || || | ||| || ||||||||| Sbjct 1698279 TCGGCCACATGTATATTGAACGATTGACTTTGATCTATGAAAGCGCCACGGTCGGCAGCC 1698338 Query 128959 ATACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTGT 129018 || || | || || || ||||| || |||||||| || || | | ||| Sbjct 1698339 ATTTGTATGGTGGTCTTAACGGAAATCTCCCAAACTGTTTTGTATAGATCACGTATATGT 1698398 Query 129019 TTTGGTATTTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAATAATTTTGTTTCGCATC 129078 || ||||||||||| ||| || | | |||| || | ||||||||| ||| ||| Sbjct 1698399 TTGGGTATTTCTTCTATGGCTTGTATGGAGCCGCGATTGGAAATAATTTTATTTTTCATT 1698458 Query 129079 TGTTCGTTGTACAAATTCAGTTTGATCAAATCGTCGGTCAAGTATTTGTTTATTACTTGA 129138 | || | | |||| |||| | | ||||| | ||| | | || | || | Sbjct 1698459 TCATCATCCCATAAATCAAGTTCGGTTAAATCTTTAAGCAAATGATGATTGACAACATTG 1698518 Query 129139 AAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGATTCA 129198 || || |||| |||||| || | | |||||| || |||| |||| ||||| |||||| Sbjct 1698519 AATTCTCCCGACAAAACACGTCTAGTGTAAATATTAGAGGTGTACGGTTCAAAGGATTCA 1698578 Query 129199 TTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCA--CGCAAAGCGAGT 129256 |||||||||| ||||| || || | || |||||||| || | ||||| || | Sbjct 1698579 TTGTTGCCTAGAATTTGTGCGGTCGAAGCTGTGGGCATTGGGGCTAATAGCAAA--GAAT 1698636 Query 129257 TTCGCAAACCGTGCTGTTTAATGTCtttttttAATTGTGTCCAGTCCCACATCGATGTGG 129316 | || | ||| || || | || | | || || | || ||||| ||||| ||||| Sbjct 1698637 TGCGTACACCATGTTGACTGATTTTCTCCTTCAACTCTGACCAGTTCCACAAGTCTGTGG 1698696 Query 129317 GTGTGTGATTCCACAAGTCGTATTGCAATATACCCAAACTGGCGGGA----CTGGAAAAG 129372 |||| | |||||||| || ||||| | ||||||| ||| | ||| | ||| ||| Sbjct 1698697 GTGTTTTATTCCACATATCATATTGTAGTATACCCTTACTTACTGGACAGCCGGGATAAG 1698756 Query 129373 TAGGAATCGTGCACGCCGTAAGCTTTT---GCCAATTCGCAACTCGCTTCCAATGCGCCA 129429 | | |||| | ||||| |||||||| ||||| |||||||| |||||| Sbjct 1698757 TTTCATATGTGC-------CATCTTTTTCGGCCAATTCACAACTAGCTTCCAAAGCGCCA 1698809 Query 129430 AAATAAATTGTTTCGGCAATTTTGGTG-TTCAACACTTTGGCCTGGTCGCTTTCGTACGG 129488 ||||||| ||||| | || | || || || |||| |||| || || || || || Sbjct 1698810 TAATAAATAGTTTC-GAAAATCTGTTGATTTAACAAAAATGCCTTTTCACTCTCATAGGG 1698868 Query 129489 CATACGC---AACATGGCAAATGTGTCGGCCAAACCTTGAATACCCACACCGATGGGTCG 129545 |||| || || |||| || ||||| ||||| |||| ||| | ||| || || || Sbjct 1698869 GTAACGCATTAAAAT--CAAA-GTATCGGCAAAACCCTGAACACCTATACCAATAGGACG 1698925 Query 129546 ATGTTTTCTATTGGATTTTTGTGCCGACAACAAGGGATAGTAGTTGATGTCTATAATTTT 129605 ||| |||||| ||| || ||| ||||| |||||||||| || ||||| Sbjct 1698926 ATGACGCAAATTGGACTTTCTAGCTTCGGGCAACGGATAAAAGTTGATGTCGATGATTTT 1698985 Query 129606 GTTTAAATTCTTGACCACAATTTTCGTTACGTATTTTAACATTTCAAAATTGTACTCGCC 129665 ||| | ||||||| | || ||| || || | ||| || ||| |||| | | | Sbjct 1698986 GTTGAGATTCTTGGTAATAACTTTTGTAACATTTTTCAATTTTTTGAAAT--CAAAGGTC 1699043 Query 129666 TACATCGATGTCGACAAATTGATTGACACAAATCGAGGCCAAATTGCAGACGGCACTTTC 129725 | | || |||||| ||| | ||| ||||||||||| || || || | || Sbjct 1699044 TTTTCTGGCGT-GACAAACATATTAAGGGCAATGGAGGCCAAATTACAAACAGCTATCTC 1699102 Query 129726 GTTTTTGTCACTGTACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAA 129785 | | || || || ||||| || | ||| || || || ||||||||||| | Sbjct 1699103 ATCAGGGGCAGAATATTCTACAATCTCTGTGCATAAGTTGCTGCACTTAATGGTGCC--A 1699160 Query 129786 ATGCTTT--TGATTACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCC 129843 ||| ||| || || ||||| |||||||||||||||||||| ||| || || || || Sbjct 1699161 ATGTTTTGCTGGTTGCTTTTGCGGTTGCAAGCATCTTTGTACAACATATAGGGTGTACCG 1699220 Query 129844 GTTTCGACTTGCGTTTCGACAATGG---TCCTGAACAAGTCTCGAGCCTTGATCTGT-CT 129899 ||||| ||||| | ||| | || | || || || || |||| |||| | || | Sbjct 1699221 GTTTCAACTTGAGCTTCAATTATAGCAAACC--AAAGAGCCT-GAGCTTTGA-CGGTGCG 1699276 Query 129900 TACAAATTTGCCACATTTCTCGTATGCCACATACAGTTGTTCAAATTCTGAGCCGTGTAC 129959 ||| || ||| || || ||||| || ||| || || || || Sbjct 1699277 ATTGGCTTTTCCTTCTTTTTCATACTTGGTATACAATTCTTCGAACTCCTCACCCCAAAC 1699336 Query 129960 GGTGTCGAGCA-AC--GGCGATTCACGCGGACACATCAAACTCCACATTCCATCCGCTTC 130016 || ||| || || ||| | |||||||| | ||| |||| |||| Sbjct 1699337 ---ATCCTGCAGACCGGGACATTTGTGTGGACACATTAGGGACCAGTCACCATTTTCTTC 1699393 Query 130017 GACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTC--GCGCTTTT 130074 || |||||||||||||| ||||||| |||||| || || || | ||||| || || | Sbjct 1699394 CACACGTTTCATAAACAAGTCGGGTATCCACAGAGCATAGAAAAGATCTCTGGCTCTATG 1699453 Query 130075 CTATCCTCGGCACCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCAC 130134 || | | || || || | ||| | | ||| || || |||| || | ||||| Sbjct 1699454 CTCTTCCTTGCCGGTATTTTTC-TTTAAATCCAA-AAATTCAAAAATATCTGAATGCCAA 1699511 Query 130135 GGTTCAACATAAATTGCCATTGCGCCCTTCCGTTTG---CCCCCTTGGTCAACGTGGCGC 130191 || || | |||||| || | || || |||||| || || || ||||| | ||| Sbjct 1699512 GGCTCCAAATAAATAGCAAAGGCACCAGGGCGTTTGCCACCACCCTGATCAACATAGCGG 1699571 Query 130192 ACGGCATTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTC 130251 | ||||||| | || | | ||||| ||| || || | ||||||||||||| Sbjct 1699572 GCTACATTGTTAAACACCCTGAGCATTGGTACCAGACCATTTGAGGTGCCGTTTGTGCCG 1699631 Query 130252 TCAATGAAACTGCCACGAGCCCGAACGTTATGAACGCTTAGACCTATGCCGCCGCCAAAT 130311 |||||| || |||| |||| | | || ||| ||| || || || || | || Sbjct 1699632 TCAATGGAAGTGCCCTTGGCCCTTATGCAGTGTACGTTTATGCCAATACCACCCGCCGAT 1699691 Query 130312 TTTGATATCA 130321 || ||||||| Sbjct 1699692 TTGGATATCA 1699701 >seq964 Length=291957 Score = 168 bits (186), Expect = 6e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| |||||||| ||||| |||||||| | || | || || ||| | | Sbjct 215640 ATGCAAATTTTCGTTAAAACATTAACGGGTAAAACAATTACATTGGAGGTTGAACCTTCG 215699 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| ||||| |||||||| || |||||||| || |||||| Sbjct 215700 GATACTATAGAAAATGTTAAAGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCAA 215759 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || || || |||||||| || ||| |||||| | |||||||| ||| Sbjct 215760 CAGCGTTTGATTTTCGCTGGTAAACAGTTGGAAGATGGCCGCACTTTATCCGATTATAAC 215819 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||||||||| ||| | || || || ||||| ||||| || ||| Sbjct 215820 ATTCAAAAAGAATCTACCCTTCACTTGGTATTGCGTTTGCGTGGTGGT 215867 Score = 159 bits (176), Expect = 3e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| |||||||| || || || |||||||| || || || |||| ||||| || ||| | Sbjct 215180 AAAAATGCAAATCTTCGTGAAGACTTTAACTGGCAAGACCATCACCCTTGAGGTCGAACC 215239 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | ||||| | || || | || ||||||||||| |||||||||||||| || || Sbjct 215240 TTCGGATACGATTGAAAATGTTAAGGCTAAAATTCAAGATAAGGAGGGTATTCCCCCAGA 215299 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 |||||||||||| || |||||||| ||||| || || || ||||| | |||||||| Sbjct 215300 TCAACAACGTCTAATTTTTGCCGGTAAACAATTGGAAGACGGACGCACTTTGTCCGATTA 215359 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || |||||||||||||| || | || || ||| | || ||||| || || Sbjct 215360 TAATATTCAAAAAGAATCTACTCTCCACTTGGTTCTACGTTTGCGTGGTGG 215410 Score = 154 bits (170), Expect = 1e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || |||||||| ||||| ||||| ||||| | ||||| ||| | || Sbjct 216655 ATGCAGATCTTCGTGAAAACTTTGACCGGAAAAACCATCACTTTGGAAGTTGAACCTTCC 216714 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | |||| || || ||||| ||||| |||||||| || || ||| Sbjct 216715 GATACCATTGAAAACGTCAAGGCTAAGATCCAAGATAAGGAAGGTATTCCCCCAGACCAA 216774 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || |||||||| ||||| || || ||| |||||| | || ||||||||| Sbjct 216775 CAACGTTTGATCTTTGCCGGTAAACAATTGGAAGATGGACGCACCCTTTCGGATTACAAC 216834 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || ||||| || | |||||||| ||||| | || || ||| Sbjct 216835 ATCCAGAAGGAATCTACTCTCCATTTAGTATTGCGTCTCCGTGGTGGT 216882 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| |||||||| || || || || ||||| ||||| | ||||| || | | Sbjct 215412 ATGCAAATCTTTGTTAAGACATTGACTGGCAAAACCATCACTTTGGAAGTTGAGCCTTCT 215471 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| |||||||||||||| || || || ||||| |||||| Sbjct 215472 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGACAAAGAAGGAATCCCACCAGATCAA 215531 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| |||||||| || || || ||||| | || ||||| || Sbjct 215532 CAACGTTTGATTTTTGCTGGCAAACAATTGGAAGACGGGCGCACATTGTCTGATTATAAT 215591 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || ||||||||||| || | ||||| || || || ||||| || || Sbjct 215592 ATACAAAAAGAATCTACATTGCATTTGGTATTACGTTTGCGTGGTGG 215638 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| ||||||||||||||||| ||||| | || | ||||| ||| | || Sbjct 215868 ATGCAAATTTTCGTTAAAACTTTAACCGGCAAAACTATTACCTTGGAAGTTGAACCTTCC 215927 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || || || || || ||||| |||||||| || |||||| Sbjct 215928 GACACTATTGAGAATGTTAAGGCCAAGATCCAGGATAAGGAAGGTATTCCCCCAGATCAA 215987 Query 22339 CAACGTCTTATATT 22352 |||||| | || || Sbjct 215988 CAACGTTTGATCTT 216001 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 22354 GCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCC 22413 |||||||| ||||| || ||| || || | |||||||||||||| ||||| |||||| Sbjct 216562 GCCGGCAAGCAGTTGGAAGATGGACGTACATTATCCGATTACAACATCCAAAAGGAATCC 216621 Query 22414 ACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||| | |||||||| ||||| ||||| || ||| Sbjct 216622 ACCCTCCATTTAGTATTGCGTTTGCGTGGTGGT 216654 >seq1190 Length=275307 Score = 154 bits (170), Expect = 1e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| ||||| |||| ||||| || |||||||||| || || | || Sbjct 186673 ATGCAGATTTTTGTCAAAACCCTAACGGGTAAGACCATCACTCTTGAGGTCGAGCCGTCC 186732 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || ||||| || ||||| ||||| || || |||||||| |||||| Sbjct 186733 GACACTATTGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCACCAGATCAA 186792 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || || || || ||||| || || ||| ||| || |||| |||||||| Sbjct 186793 CAACGTTTGATTTTCGCTGGAAAACAATTGGAAGATGGCCGTACTCTCTCTGATTACAAT 186852 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||||||||||| | || || || ||||| | || || ||| Sbjct 186853 ATTCAAAAAGAATCCACTTTGCACTTGGTATTGCGCCTTCGTGGTGGT 186900 >seq1304 Length=336898 Score = 145 bits (160), Expect = 6e-30 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 22210 TTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTG 22269 || ||| ||||||| || || || ||||||||||| ||||| || | || | ||||| Sbjct 274408 TTCGTATAGATGCAGATCTTCGTCAAAACTTTAACTGGTAAGACCATTACCTTGGAAGTT 274349 Query 22270 GAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCA 22329 || | |||| ||| | || || |||| ||||| |||||||| || ||||| || Sbjct 274348 GAGCCTTCCGACACCATTGAAAATGTCAAGGCCAAAATCCAAGACAAAGAAGGTATCCCC 274289 Query 22330 CCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCC 22389 || |||||||||||| | || || || || ||||| || || ||| |||||| | ||| Sbjct 274288 CCAGATCAACAACGTTTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGCACCTTGTCC 274229 Query 22390 GATTACAACATTCAAAAAGAATCCACCATACATTTAGT 22427 || |||||||| ||||| |||||||| ||||||| || Sbjct 274228 GACTACAACATCCAAAAGGAATCCACTTTACATTTGGT 274191 >seq869 Length=1271022 Score = 89.7 bits (98), Expect = 4e-13 Identities = 120/166 (72%), Gaps = 1/166 (1%) Strand=Plus/Plus Query 117044 CAGCAAATTGGCGCGA-CGCATGATCGCTTTCGCCATTGTCGAAGGCATTTTCTTTTCAG 117102 ||||||||| | || || || || ||||| || ||| || || ||||||||| | Sbjct 483805 CAGCAAATTTTGGTGAACGTATTATTGCTTTTGCTGCTGTAGAGGGTATTTTCTTTAGTG 483864 Query 117103 GCAGTTTTGCTGCCATATTTTTTATCAAGACCAAAGGTCTAATGCCGGGTCTAACGTTTA 117162 ||||||||||| |||| |||| | |||| ||||| ||||| ||||| || || Sbjct 483865 GCAGTTTTGCTTCCATCTTTTGGCTAAAGAAACGTGGTCTTATGCCTGGTCTTACATTCT 483924 Query 117163 GCAACGAATTAATATCGCGTGACGAAGGTTTACACACCGATTTTGC 117208 ||| || || ||||| ||||| || |||||||| |||||||| Sbjct 483925 CCAATGAGTTGATATCACGTGATGAGGGTTTACATTGTGATTTTGC 483970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419719237259845