Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_008720.1 Length=70153 Score E Sequences producing significant alignments: (Bits) Value seq410 253 9e-63 >seq410 Length=72445 Score = 253 bits (280), Expect = 9e-63 Identities = 529/781 (68%), Gaps = 8/781 (1%) Strand=Plus/Minus Query 67004 AATAAAACCACCTTGCTGTCCAGTAGTTTCTACACCAACTTGTTGTGGTTGGTATTCCTG 67063 ||| ||||||| |||||| || || |||||||||||| ||||| | || || Sbjct 22781 AATGAAACCACTTTGCTGACCTGTTACTTCTACACCAACAGACTGTGGGTTATAAATTTG 22722 Query 67064 AACCAGACGGAATAAGTCATCAAAGTTCTTATCCATAGTTTGACGGCAAGCAA-TACCAT 67122 |||||| | |||||| |||| || ||| ||||| ||| | |||| |||||| Sbjct 22721 AACCAGTCTGAATAAATCATTAAGGTTAGCGTCCATCTCTTGTTT-CTTGCAAATACCAT 22663 Query 67123 CTACCCAGAACCAGTCACCGTTAGAACCATATGCCCATACTGATATTACAGAGTAGTCAG 67182 ||||| || |||| | ||| | | | |||| ||||| || || ||| |||||||| Sbjct 22662 CTACCAAGTACCAATTACCTTGATAGTCATACGCCCAAACAATAATGACACTGTAGTCAG 22603 Query 67183 ATACCTGCTTCTCACTAGT-AGCAAAGTCAGTAGTGATATAAAAGTTATAA--CAAGAAC 67239 || ||| | || ||||||||| || || || ||| | | |||| | ||| Sbjct 22602 CACTCT-CTTTAGAAGAGACAGCAAAGTCTGTGGTAATGTAATAATGATAATTCTGTAAC 22544 Query 67240 GCAGACGTAATAGCTGTGTACGGGAATACCATTTAATCTCTGAATCCTGAATCAAACGCT 67299 | | | | | | |||||| || || | | ||| ||| || ||||||| | || Sbjct 22543 TGTGTCATGAGA--TTTGTACGAGAGTAATACTGTATCCATGACTCTTGAATCATTCTCT 22486 Query 67300 CATCTTCAGAACTGATACGTAACATCAATTCCTGATAGAAGGATGCCAGCTTACCTGTCT 67359 | || ||||| ||||||||||| | ||| || | || ||| | || || Sbjct 22485 CTTCATCAGAGGCAATACGTAACATAAGTTCTTGGTTAAATGATTTAATTCGCCCAGTTC 22426 Query 67360 TCAATGCCATCTGGTATTGGTCATTGATGTAGTCATAAGAGAAACGGTCTTCCCAAGCAC 67419 ||| |||| || || ||| || | | ||||| ||||| || || ||| |||| Sbjct 22425 TCACAGCCAACTCATACTGGCTCTTAACAAATTCATACGAGAATCGCTCAGGCCATGCAC 22366 Query 67420 CTTGAAATTCTTCTCGCGTACAGGGGAATTTCTCGCATACAGGCCATACGTTGACATCCC 67479 | |||||| | | ||| ||||| ||| || | ||| | ||||| || | || Sbjct 22365 CAACAAATTCATGTTCTTCACAAGGGAAGCGCTCACAGATAGGGTAAACGTTAACGTACC 22306 Query 67480 ATGCACCAGATTCAACTGCTTCAATAAGAATATCTTCCTTATTAAAGGGAGTACCATTAA 67539 | | || || ||||| || ||| |||| ||| | ||||||||| || |||||||||| Sbjct 22305 AACCGCCTGACTCAACGGCCTCATATAGAACATCATTCTTATTAAAAGGCGTACCATTAA 22246 Query 67540 AGATTACCTTACGTCTTGTTGGGTCAAGAGCATGGTTCACGCCCTTATATACTGTGTCTT 67599 ||| | ||| ||||||||||||| ||||||| || || ||||| || ||||| | Sbjct 22245 AGACAATCTTTTTCTTTGTTGGGTCAAGGGCATGGTCAACACCGTTATACACAGTGTCCT 22186 Query 67600 TAATAGCTTCCATTGATGTGCGTGAGCGAGCATCATCATCACTAACTAAGTCATCCAGTA 67659 |||| ||||||||| ||| || |||||| || ||||| ||||||||||| |||| Sbjct 22185 TAATCGCTTCCATTTCTGTTTTAGACTTAGCATCCTCGTCACTCACTAAGTCATCAAGTA 22126 Query 67660 CGCAAAGAACGGGACGTTTACCAAAAATCTTAGTACCACGAAGACCTGTCTTAGCACCAA 67719 | || ||||| |||||| | || ||| ||||||| | ||||||||||||||||| Sbjct 22125 CAGCCAGGGTAGGACGCTTACCATACATTTTATTACCACGGATACCTGTCTTAGCACCAA 22066 Query 67720 ACATCTTCACACCAAGACGGTGACCTTCAGCATTTACAAACTCAAGGTAGTTATCCGTGA 67779 ||| | |||| ||||| |||||||| || ||||||| |||||||| | Sbjct 22065 ACAAACCTAATCCAAACTTATGACCATCAGCATTCACGAACTCAATACGCTTATCCGTAA 22006 Query 67780 A 67780 | Sbjct 22005 A 22005 Score = 194 bits (214), Expect = 8e-45 Identities = 666/1016 (66%), Gaps = 38/1016 (4%) Strand=Plus/Minus Query 51876 GCTACAGTTTTAATAAGAGCCAGACGTTCTGGGCGTTTAACCAGAATACCGTAGTACCAT 51935 || || |||||||| | |||| ||| || | ||| || | |||||||| |||| Sbjct 35300 GCAACTGTTTTAATCATCGCCAAACGCTCAGAGCGAAGAATTAACATACCGTACCACCAC 35241 Query 51936 TTGATGCTGGAGAAGCCAGTTTCACCATATGGGTCATTACGGTCAGCAGTTTCTTTACCA 51995 || || ||| ||||||| |||||||||||||| |||||||||||||| || ||| Sbjct 35240 AACATAGAGGTGAATCCAGTTTGACCATATGGGTCATGACGGTCAGCAGTTTGTTCCCCA 35181 Query 51996 GGCATCTTAGTCATA-ACGGTAAATTTAAGTGATTTACCATCAGTCTGGAAGCCAATGGA 52054 |||| ||||| || || | || || | ||| || ||| | ||||||| | Sbjct 35180 GGCACTTTAGTAATTGACTGGAACTTATACTGACGG-CCTGCAGCTTCAAAGCCAACAGT 35122 Query 52055 GGTAAAGGAATCATCACCTACTACCAGCATTGGGTAAACGTCATAGTGCTCTTGGCCAGA 52114 ||||| ||| || |||| || |||| ||||||| | | ||||| | || | ||| Sbjct 35121 AGTAAATGAACCACCACCAACAACCATCATTGGGAAGATATCATATTTATCGT---CAGT 35065 Query 52115 --TACCATAGAGGTACGGTAACCAGGGTTAGCTCCAGTAGCCTGTGCACCAGCACCTGCC 52172 ||| ||||| || ||| | | |||| | | | ||| | ||||||| Sbjct 35064 GTTACGATAGA--TA--GTATCTTTG-TTAGTTACCGCAGCACCTTTACCAGCAA----- 35015 Query 52173 CAGTGCAGCATCTC-TGGAACCTGA--ATGATACGGAACTTATCAATAGAACCGACTTCA 52229 |||| || | | ||| | | || | |||||| ||| |||||| |||||| Sbjct 35014 -AGTGTT---TCGCATTGAAGTTCACAATTACACGGAATGGGCCAACAGAACCAACTTCA 34959 Query 52230 CCATTCATGATAGTACCTGCATCAGCATAGTGCTGAGTTTCGATAAAGGCTTTATTACCG 52289 |||| |||| |||||| |||||||||| || ||||| ||| |||||| Sbjct 34958 CCATGTGCGATATGACCTGCCGCAGCATAGTGTTGTACAGGAATAAACGCTGGATTACCA 34899 Query 52290 AACAGGTCTTTCATTGCTTTCAGTTCTGGA-ACCAGTTCAGAACCTACATACATAACACG 52348 || |||||||| | | | | | | | |||||| ||| | ||||||| ||| Sbjct 34898 AAGTTATCTTTCAT-GTTACGAATAGTAGTCAGCAGTTCGTTACCGATATACATATAACG 34840 Query 52349 AGTAGCACCGATGACTTTA-GTATCAATCATACGGGAACCAGTGATGATGGTAGTCTGAG 52407 || || || || | ||| |||||| | | | ||||| |||| | | ||| | | Sbjct 34839 AGCAG-ACGGAATAGTTTTCGTATCAGTGAATGGAGAACCTTTGATAACGTCAGTGTTAC 34781 Query 52408 TAGGAGTACGGTTCTCCGTCAGAATCTGGTCAAGACGCATCAGGTTCTTATAAGAAACAA 52467 || |||||||| || | ||||| | || | ||| ||| |||| ||||| ||| Sbjct 34780 GTGGTGTACGGTTTTCGTTAAGAATATCATCTAAACGTTGCAGATTCTCATAAGTAACTT 34721 Query 52468 CAGACGGGGTA--GAACCTTCACCAGTGATGGTGGCATCAGAAGTAGCAGCACCAGCATA 52525 |||| | || | ||||||||||||||| |||| || |||||||| | Sbjct 34720 CAGA--GATTACCGCACCTTCACCAGTGATTTCATCATCTTTCAATGCCACACCAGCAAA 34663 Query 52526 CAGAACAGTACCGGCAGCAGCCAGCAGGTCTTTTTGCAGTACAGCTTCAGTAATCTGAGT 52585 || | |||||| ||| | | || || ||| || | ||||||| || || Sbjct 34662 CATGATAGTACCAGCACCTTGTAACAACTCAATTTCGAGCATGTCTTCAGTGATTTGTAC 34603 Query 52586 AGCACCATTCATCAGTTCACGGGACAGATGTTCCATCAGGCCATCA--TCAGAATCGAAG 52643 ||||| | | ||||||||| || ||||| |||||| |||| |||| ||| ||| Sbjct 34602 CGCACCTGTTACCAGTTCACGCTGCATATGTTTCATCAG--CATCGGGTCAGTATCAAAG 34545 Query 52644 TCAATTGATTCCTGAGTGAACTCATAGAAGAAGCCAAACTTGTGAATAGAACCTTCACGA 52703 || || || || | ||| ||||| ||||| || | || ||| ||||||| Sbjct 34544 TCGATAGAGTCTTTAGTCCACTCACGGAAGATACCCATTTTAGAAATGGAACCTTTGATT 34485 Query 52704 GCAATACGAGTAAAACCAACACGGTTAACTCGACCACCGTTTTCAGTCA-GTAGAGGCAG 52762 | | ||| | ||||||||||||||| |||||||| | |||| || ||| |||| Sbjct 34484 TCCAGACGGACAGTACCAACACGGTTAACACGACCACCTTCTTCACCCATGTAC-GGCAT 34426 Query 52763 TTTGGAAGTAATGTTACCGATGTCTTTGCTGGAACCATACAGGTTACCGTTAACGATGGT 52822 ||| | || ||||| | |||||| ||||| || | |||||| | ||| | Sbjct 34425 TTTATCAAGGATTTTACCAACGTCTTTAGAAGAACCGTATAAGTTACCATCTTTGATTTT 34366 Query 52823 AGCACCACTTGCATCAATACCCTGGTCATTGATGTTACGGTCATCCAGCAGAGGAA 52878 | | ||| ||||| ||||| ||||| || | ||||||||||||||||| |||| Sbjct 34365 AACGCCAGAAGCATCGATACCTTGGTCGTTCACGTTACGGTCATCCAGCAATGGAA 34310 Score = 134 bits (148), Expect = 6e-27 Identities = 197/279 (71%), Gaps = 0/279 (0%) Strand=Plus/Minus Query 24575 TGGGCTAGACTTTGCTTCTCTCGAAGACCGTATATCTGCTTTAACAACCAAAGACCCTAA 24634 ||| |||||||||| | ||| |||||| | ||||| |||||||| || ||||||||||| Sbjct 61856 TGGACTAGACTTTGATAGTCTTGAAGACAGAATATCCGCTTTAACCACTAAAGACCCTAA 61797 Query 24635 TAAACTGAAGGTGTATACCGATGGTTACGATGGGCATAGTCTTCGTGCGTATGCTTACTT 24694 |||||| ||||||||||| |||||||| ||||| || || | ||||| | |||||| Sbjct 61796 TAAACTTAAGGTGTATACAGATGGTTATGATGGACACTGTTTGCGTGCTTTCTATTACTT 61737 Query 24695 CGGTGAGATGATGCCTGACATTGAAGATACGGTAGAGTCTGTTAATTCTATTCAGGAGAA 24754 | || ||||| || |||| || || ||||| | |||| ||| || || Sbjct 61736 CAAAGACCGTATGCCAGATATTGTTGAAACTGTAGATAGTATTAACAGTATCGCTGACAA 61677 Query 24755 GTACAAAGCATATCGTCAGGATTCTAAAGCACCTACCTTTGCTCTTACCTATCAGGGCAC 24814 ||| | | || || ||| ||| ||||||| || ||| | || ||| ||| || Sbjct 61676 ATACCCTGATGAGCGACAAGATAGTAAGTCACCTACATTCGCTTTAACTTATTTGGGTAC 61617 Query 24815 GTACATCACTTTGATGAAGAACTGTGGTTTCCCTGAACA 24853 | || || || | |||||| ||||| |||||||| Sbjct 61616 ATGGATGACATTAGTCAAGAACCTTGGTTGGCCTGAACA 61578 Score = 118 bits (130), Expect = 5e-22 Identities = 284/423 (67%), Gaps = 9/423 (2%) Strand=Plus/Minus Query 28277 TGTGAAAAGCAAGCAGCAGCTTTAGCTGACCATGAAGAGATTCGTAAAGCAGAACTGGAA 28336 |||||| | |||||||| | | || |||||||| || ||||||||| ||| Sbjct 56403 TGTGAAGACAGAGCAGCAGAAATGACGGAGCATGAAGAAATCTTAAAAGCAGAAATGGCC 56344 Query 28337 CATCGCTATTTTAAGGCACTGAAATTGGCAGGTGCATTTGCATTTGTTGATAACAGTATC 28396 ||||| || || ||| | | ||||| |||||||| | |||||| ||| |||| | | Sbjct 56343 CATCGTTACTTCAAGACTATTAAATTAGCAGGTGCTTACGCATTTATTGC--ACAGGAAC 56286 Query 28397 ATG--GTAGAGATGGAACACCTGAAGCAAGCAATTCTTCTGGTAGAAGAGTCCGGTGTTG 28454 | || ||||||| || || | || ||| || || ||||| || |||| | Sbjct 56285 CAGAAGTGAAGATGGAGCATTTGCATTCTGCTATTGCGCTTGTGGAAGAATCAGGTGAAG 56226 Query 28455 CATTCCAGACTATCCTCAATCGTGAAAAAGCCTACGTTAAATTAGCCAAGTATATTGCAT 28514 | | | | ||| | |||||||| ||| | |||| || ||||| |||| | ||||| Sbjct 56225 CGCTTAAAGCAATCATGAATCGTGATAAACCTTACGAGAAGTTAGCGAAGTTTGTTGCAA 56166 Query 28515 CTGTTGGTACTGAAGTTACTCATGCAGACTTGCTTGAGGCTTTACCATTCTATAAGAGTG 28574 | ||||| ||| |||||| | || ||||| |||| |||| |||| ||||| | Sbjct 56165 CAGTTGGCCGTGATGTTACTAACGCTGACTTTGTTGACAAACTACCTTTCTTTAAGAAAG 56106 Query 28575 GGAATGCTGC-ACGTAA--TGAGATGATGACTTTAGCTACTGCATGGGGCTATAAACAGC 28631 | || || | | || |||| | ||| || | ||| ||| ||||| ||| | Sbjct 56105 CAAGTGGAGCCATGAAACGTGAGTTAATGTCTCTGGCTCGTGCTTGGGGTTATGGTAATA 56046 Query 28632 ACATCATCATTAAGAAGACATACAAC-GAAGGTATTGAGTTCTTCCGTGGTGAAACACTG 28690 |||| || || || | | ||||| ||||| ||||| ||||| | |||||||||||| Sbjct 56045 ACATTATTATCAAACA-ATATACACGAGAAGGGATTGACTTCTTTCACGGTGAAACACTG 55987 Query 28691 AAA 28693 || Sbjct 55986 GAA 55984 Score = 116 bits (128), Expect = 2e-21 Identities = 189/265 (71%), Gaps = 8/265 (3%) Strand=Plus/Minus Query 55741 TTGACCATTGGCACTACGTCCAAGTAAGTCAATCATCCCACGCATTACAGCACCAAGTAC 55800 ||||||| | ||| |||| |||| | |||||||| |||| || |||||| | | Sbjct 31473 TTGACCACTAGCAGTACGACCAATGATATCAATCATTGCACGTTCTAGTGCACCA-GAAA 31415 Query 55801 TGC-TTGGTTATCACCTAATAACT-CTGCATCCGGTTCGCCATACATATCCCGTTTAACA 55858 | | ||| ||||| | ||||| | ||||||| ||||| ||| | | | | ||||| Sbjct 31414 TACGTTGATTATCTGC-AATAAGTTCTGCATCAGGTTCACCAAAAACACTGCCAGTAACA 31356 Query 55859 GGCATATATGGAATTAATACAAATGGGAGTTTGCCATCAGGATAAGGATTCTTCTCTAAA 55918 |||||||| | | | | |||| |||| ||| ||||||||||| ||||| | || || Sbjct 31355 GGCATATAGGCAGAAACTTCAAACGGGAATTTTCCATCAGGATATGGATTTCTATCACAA 31296 Query 55919 CGAATAA--GAGTAGAACCAATCCAAGTAGCAACAATAGGCTCTAATACACCATTCCCTT 55976 ||||||| ||| ||| | | | | | |||| ||| ||||| ||||||| |||| Sbjct 31295 CGAATAATTAAGT--CACCTACATAGGCAACCACAACAGGTTCTAACTCACCATTACCTT 31238 Query 55977 CAATATCCCAGAATCCCCAATATTC 56001 |||||||||| | |||||||| || Sbjct 31237 CAATATCCCACATACCCCAATACTC 31213 Score = 113 bits (124), Expect = 2e-20 Identities = 178/249 (71%), Gaps = 7/249 (3%) Strand=Plus/Minus Query 27758 CCTGCTGTGAAACAGTTACGTCATAAACTCTTATTAGCTGGATGTGGTGCTATTAA-CTT 27816 ||||| |||||||| | ||||||| | | ||| |||| ||||||||||| | || ||| Sbjct 56928 CCTGCCGTGAAACAAATGCGTCATACAGTTTTACTAGCCGGATGTGGTGCGCTAAATCTT 56869 Query 27817 ACAGATTGATGAGATTGGTTCAAACCTTC--TCGCTAATGCTGATGTATTAACTGTGTTC 27874 || | |||||||||||||||||| | | || ||| ||||| ||| ||| Sbjct 56868 GAAG-TCGATGAGATTGGTTCAAACATCCAAAAGCAAAT--TGATGCGTTAGGCACATTC 56812 Query 27875 CTTGAGTTATATGACCAAGGCAAGATTAAACAGAAACTTACTAAGAATACTACTGAAAGT 27934 ||||| ||||||||| ||| |||||| ||||| || || || ||| |||| ||| Sbjct 56811 CTTGAATTATATGACGTAGGGTTAGTTAAACCTAAACTAACAAAAAACACTTCTGACAGT 56752 Query 27935 ATTCGTAGTGAGGAAGTTGATGGTAAAACTCCAGCTAACCTTCTTCTGTTTGGTACACCG 27994 | |||| ||| || |||| || | ||| |||||||| | | |||| || || ||| Sbjct 56751 ACACGTAATGAAGATATTGACGGAAGAACACCAGCTAATATGTTGATGTTCGGAACTCCG 56692 Query 27995 AGCAAACTT 28003 || ||||| Sbjct 56691 -GCTAACTT 56684 Score = 89.7 bits (98), Expect = 2e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 5460 ATGCAAACTTTTACTGCCCGTGAATATCTGAAAATTGACATTGCTAATAACTATGGTCTG 5519 ||||||||||| || | ||||||| | |||||||| ||||| || || | ||| | Sbjct 7167 ATGCAAACTTTCACAGGTACTGAATATTTAAAAATTGATATTGCAAACAATTTCGGTTTA 7108 Query 5520 GATAAAGAAGACTGGGATGACCGTATTGCATGGTTCGATAAGAATGAGAACAACCTACTG 5579 ||||||||| | || |||||| | | |||||| ||| ||||| | || ||| Sbjct 7107 GATAAAGAACTATTTGAAGACCGTTTATCTTGGTTCACTAATAATGAACATAAGCTAGAA 7048 Query 5580 AACCTTGTAAGAGAAGCTGAAGAACCAGCCCTGTTCTATGCTGGTGTTAAAGCATGGATG 5639 | | | || | |||||| || |||||||| || | ||||| ||| | |||| | | Sbjct 7047 AGCTTGGTCAAAGAAGCCGAGGAACCAGCACTAATGTATGCGGGTATCCTCGCATATAGG 6988 Query 5640 GACGTTAAGGAAGGTAAGCCAATTGGTTA 5668 || | || |||||| |||| |||||| Sbjct 6987 GATACTCAGAAAGGTATCCCAACTGGTTA 6959 Score = 82.4 bits (90), Expect = 3e-11 Identities = 133/189 (70%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 56548 ACGAACATAGTTATCAATAAAACTTACACGATTTAGTTTGGTACGGAATTGGTAGTT-AA 56606 ||| ||||| | ||||||||| | || ||| | || ||| || |||| ||| || Sbjct 30657 ACGTACATAATCATCAATAAATTTAACTTTATTAATTTGCGTATCAAACTGGTGGTTCAA 30598 Query 56607 GAACCAGTTCATTCTGGCGTGCACCTTGTACATCTTCCCAAGTTACAGGAGTAACTTTGA 56666 ||| | | |||||||||||| | || | |||||||| || ||||| | | Sbjct 30597 TAACAACAT-ATTCTGGCGTGCTCTTTCTTTGGTTTCCCAAGACTTTGGCTTAACTGTAA 30539 Query 56667 ATAACTTATTAGAACCAAGGAAAGGTTCAGTTAAAGCAGAGTAACGCCATTCAGCTTGGC 56726 |||| | | || |||| |||||| || | || |||| |||||||||||||||||| | Sbjct 30538 ATAAGTCTTGAGTACCATTGAAAGGCTCTGACAATGCAGGGTAACGCCATTCAGCTTGTC 30479 Query 56727 GACGTACAA 56735 |||||||| Sbjct 30478 TACGTACAA 30470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 224360115894002