Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq964 109 4e-19 seq418 87.8 1e-12 >seq964 Length=291957 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 21831 AAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCC 21890 ||||||||||| || | || || ||||| ||||| ||||| ||| | || ||| | Sbjct 215181 AAAATGCAAATCTTCGTGAAGACTTTAACTGGCAAGACCATCACCCTTGAGGTCGAACCT 215240 Query 21891 GCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAAC 21950 | || ||| | | || ||||| |||||| ||||| |||||| | || | | Sbjct 215241 TCGGATACGATTGAAAATGTTAAGGCTAAAATTCAAGATAAGGAGGGTATTCCCCCAGAT 215300 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 ||||| | || || ||||| || |||||| | ||||| | ||| || ||||||| Sbjct 215301 CAACAACGTCTAATTTTTGCCGGTAAACAATTGGAAGACGGACGCACTTTGTCCGATTAT 215360 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||| || ||||||||||| || |||| ||||||| || || || Sbjct 215361 AATATTCAAAAAGAATCTACTCTCCACTTGGTTCTACGTTTGCGTGGTGG 215410 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || |||||||||||||||| ||||| ||||| |||| ||| | | Sbjct 215640 ATGCAAATTTTCGTTAAAACATTAACGGGTAAAACAATTACATTGGAGGTTGAACCTTCG 215699 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || |||| ||||| || ||||| ||| | || | | ||| Sbjct 215700 GATACTATAGAAAATGTTAAAGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCAA 215759 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||| | | || || ||||| ||||| | |||||| ||| | ||||||| || Sbjct 215760 CAGCGTTTGATTTTCGCTGGTAAACAGTTGGAAGATGGCCGCACTTTATCCGATTATAAC 215819 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||| || |||||||| ||||| ||||||| ||||| || || || Sbjct 215820 ATTCAAAAAGAATCTACCCTTCACTTGGTATTGCGTTTGCGTGGTGG 215866 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| |||| ||||| || ||||||||||| || ||||| || | | Sbjct 215412 ATGCAAATCTTTGTTAAGACATTGACTGGCAAAACCATCACTTTGGAAGTTGAGCCTTCT 215471 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || |||| |||||| || ||||| || | || | | ||| Sbjct 215472 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGACAAAGAAGGAATCCCACCAGATCAA 215531 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || | | || ||||||||||||||| | ||||| || || | ||||| ||| Sbjct 215532 CAACGTTTGATTTTTGCTGGCAAACAATTGGAAGACGGGCGCACATTGTCTGATTATAAT 215591 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || || || |||||||| | ||| ||||||||||||| || || || Sbjct 215592 ATACAAAAAGAATCTACATTGCATTTGGTATTACGTTTGCGTGGTGG 215638 >seq418 Length=26814 Score = 87.8 bits (96), Expect = 1e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 20076 GGGTTTGCACGGGTTCCATGTCCACGAATACGGCGACATGAGCAACGGCTGCACGTCGGC 20135 |||| | || || |||||||| ||||||| || |||| | |||||||||||| || || Sbjct 12837 GGGTCTACATGGTTTCCATGTTCACGAATTTGGTGACAATACCAACGGCTGCACCTCAGC 12896 Query 20136 CGGCGAGCATTTTAATCCCACCGACGAAGACCATGGCGCTCCCGATGCCGAAATTAGGCA 20195 || ||||| |||||| | | | || ||||| || |||| | |||| ||| || Sbjct 12897 TGGTCCACATTTCAATCCCTGTGGCAAGGAACATGGTGCCCCCGGAGATGAAAATAGACA 12956 Query 20196 TGTCGGTGATTTAGGCAACAT 20216 ||| |||||||| ||||| || Sbjct 12957 TGTAGGTGATTTGGGCAATAT 12977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358117323361402