Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1190 145 2e-29 seq964 136 9e-27 >seq1190 Length=275307 Score = 145 bits (160), Expect = 2e-29 Identities = 148/193 (77%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| ||||| || || | ||| || || || ||||| ||||||||||| ||||| Sbjct 186864 TTCTTTTTGAATATTGTAATCAGAGAGAGTACGGCCATCTTCCAATTGTTTTCCAGCGAA 186805 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||| ||| |||||| ||| ||||||||||| ||||| || || ||||| || || Sbjct 186804 AATCAAACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATT 186745 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| |||| ||| || || || || || ||||| ||||| || || || || ||||| Sbjct 186744 TTCAATAGTGTCGGACGGCTCGACCTCAAGAGTGATGGTCTTACCCGTTAGGGTTTTGAC 186685 Query 288462 GAATATCTGCATT 288474 || ||||||||| Sbjct 186684 AAAAATCTGCATT 186672 >seq964 Length=291957 Score = 136 bits (150), Expect = 9e-27 Identities = 154/204 (75%), Gaps = 7/204 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| |||||||| |||| | |||||||||||||| |||||||| || || || Sbjct 215375 TTCTTTTTGAATATTATAATCGGACAAAGTGCGTCCGTCTTCCAATTGTTTACCGGCAAA 215316 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 || ||||| ||||| ||||||| || || || ||||| || ||||| || || || Sbjct 215315 AATTAGACGTTGTTG---ATCTGGGGGAATACCCTCCTTATCTTGAATTTTAGCCTTAAC 215259 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||||| || | ||| | ||| || || || ||||| ||||| || || | |||||| Sbjct 215258 ATTTTCAATCGTATCCGAAGGTTCGACCTCAAGGGTGATGGTCTTGCCAGTTAAAGTCTT 215199 Query 288459 GACGAATATCTGCATTATGTTATT 288482 ||||| || |||||| | ||||| Sbjct 215198 CACGAAGATTTGCATT-TTTTATT 215176 Score = 131 bits (144), Expect = 4e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| |||||||| || | | ||||| |||||||| |||||||| || || || Sbjct 215603 TTCTTTTTGTATATTATAATCAGACAATGTGCGCCCGTCTTCCAATTGTTTGCCAGCAAA 215544 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||| ||| |||||| ||||||||||||||| || || ||||| ||||| || || Sbjct 215543 AATCAAACGTTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGAATTTTAGCTTTAACATT 215484 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| |||| ||| | || ||||| | ||||| || || || |||| ||||| || Sbjct 215483 TTCAATAGTATCAGAAGGCTCAACTTCCAAAGTGATGGTTTTGCCAGTCAATGTCTTAAC 215424 Query 288462 GAATATCTGCAT 288473 || || ||||| Sbjct 215423 AAAGATTTGCAT 215412 Score = 122 bits (134), Expect = 2e-22 Identities = 144/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || ||||| | | || || || ||||| | |||||| || |||||| Sbjct 217073 TCCTTTTGGATGTTGTAGTCAGACAAGGTACGACCATCTTCCAGTTGTTTACCGGCGAAG 217014 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| ||| || ||| |||||| || ||||| |||||||||||||| || || ||| Sbjct 217013 ATCAAACGTTGCTGA---TCTGGGGGAATACCTTCCTTATCCTGGATTTTAGCCTTTACG 216957 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | |||| | ||| ||||| | ||||| || || ||||||| || || Sbjct 216956 TTCTCAATGGTATCGGAAGGTTCGACTTCCAAAGTGATGGTTTTGCCGGTCAAGGTTTTA 216897 Query 288460 ACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 216896 ACGAAGATTTGCAT 216883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179628509166414