Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq1348 118 1e-21 seq1531 95.1 1e-14 seq253 84.2 3e-11 >seq1348 Length=1847788 Score = 118 bits (130), Expect = 1e-21 Identities = 370/570 (65%), Gaps = 11/570 (2%) Strand=Plus/Plus Query 114275 AAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTA 114334 ||||| || ||| || | ||| || ||||| | ||||| || ||||| | || ||| Sbjct 1698879 AAAATCAAAGTATCGGCAAAACCCTGAACACCTATACCAATAGGACGATGACGCAAATTG 1698938 Query 114335 GACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTG 114394 ||||||| ||| || |||||||| || | ||||| | | || ||||| ||| Sbjct 1698939 GACTTTCTAGCTTCGGGCAACGGATAAAAGTTGATGTCGATGATTTTGTTGAGATTCTTG 1698998 Query 114395 GTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCAT-- 114452 || | ||| ||||| | | | | |||| | ||||||| |||| ||| Sbjct 1698999 GTAATAACTTTTGTAACATTTTTCAATTTTTTGAAATCAAAG------GTCTTTTCTGGC 1699052 Query 114453 -TGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCA 114511 ||||| || || |||||| || || |||| |||||| |||| ||||||| || Sbjct 1699053 GTGACAAACATATTAAGGGCAATGGAGGCCAAATTACAAACAGCTATCTCATCAGGGGCA 1699112 Query 114512 GTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 114571 | || |||| ||| || || || || || | |||||||||||| | ||| | || Sbjct 1699113 GAATATTCTACAATCTCTGTGCATAAGTTGCTGCACTTAATGGTGCCAATGTTTTGCTG- 1699171 Query 114572 TTTGACTTTG-TGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTG 114630 ||| |||| ||| || ||||| ||||| | ||| || || || || || || ||| Sbjct 1699172 GTTGCTTTTGCGGTTGCAAGCATCTTTGTACAACATATAGGGTGTACCGGTTTCAACTTG 1699231 Query 114631 GGACTTGAGAATAGCCTTCCAGACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTC 114690 | | | ||||| ||| | | | ||| || ||| |||||| || || Sbjct 1699232 AGCTTCAATTATAGCAAACCAAAGAGCCTGAGCTTTGACGGTGCGATTGGCTTTTCCTTC 1699291 Query 114691 CTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGG 114750 | || ||||| || || | |||| ||||| |||||| | || || || || Sbjct 1699292 TTTTTCATACTTGGTATACAATTCTTCGAACTCCTCACCCCAAACATCCTGCAGACCGGG 1699351 Query 114751 TGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAG 114810 || | ||| || | || ||||| | |||| || || ||||| ||||| || | Sbjct 1699352 ACATTTGTGTGGACACATTAGGGACCAGTCACCATTTTCTTCCACACGTTTCATAAACAA 1699411 Query 114811 GTCTGGGATCCAGAGAGCTGAGAAGAGATC 114840 ||| || ||||| ||||| |||| ||||| Sbjct 1699412 GTCGGGTATCCACAGAGCATAGAAAAGATC 1699441 >seq1531 Length=926236 Score = 95.1 bits (104), Expect = 1e-14 Identities = 225/334 (67%), Gaps = 12/334 (4%) Strand=Plus/Minus Query 171726 AACCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGA 171785 |||| ||||||||||| |||| || || || | |||||| || | |||||||| Sbjct 339158 AACCGGTGCCAATACCATCGGCACCATTAACCAAAACCATGGGTATAACCGGCATATACC 339099 Query 171786 AGTCTGGTTCAATCGCACGCCCATCATCATCCAAATAGTTGAGCACGGGGTCGTCCCTCG 171845 | | |||||||||| | ||||||||| || ||| | || | || || || | Sbjct 339098 ATTGTGGTTCAATCCTTTGACCATCATCAACCTCATACTGCAGTAAAGGATCATCATGGG 339039 Query 171846 GATCAAAGATTTTACGAGCATCCTTGGTGAG----TTTTGTGAAGATGTACCTCGTT-TG 171900 ||| ||| || ||| || | | ||| | | ||||| || || | | || Sbjct 339038 GATGAAAAATAAGACGTGC----TAGAGGAGACATTATAGTGAAAATATAACGAGCGCTG 338983 Query 171901 AGACGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACACGGTTCAAGGAGATT 171960 || ||||||||| ||| | | ||| || || |||||||| | || || |||||||| Sbjct 338982 GCACA-ATCTTTGCCGCCCGTTAAACGTGTACCGAATTGACCTCTAGGCTCTAGGAGATT 338924 Query 171961 GATATTGTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGT-ATCCGCGAGGGAGA 172019 ||||| || || |||| |||| | |||||| || ||||| || || | | | | | Sbjct 338923 AATATTATTCGAGCCCACATAGTTTTGGGCCAAATTAACAATGGTCATTTGTAATGAA-A 338865 Query 172020 CTTCACCGTGATGGTAGGCCGACTTGTCCGCGAC 172053 | |||||||||||||| || ||| | || || || Sbjct 338864 CCTCACCGTGATGGTAAGCGGACATTTCAGCCAC 338831 >seq253 Length=360942 Score = 84.2 bits (92), Expect = 3e-11 Identities = 194/288 (67%), Gaps = 6/288 (2%) Strand=Plus/Minus Query 10786 ACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGC 10845 ||| || || |||||||| || | | || |||||| | ||| ||||| ||||| Sbjct 67712 ACGGTCGAAACGACCTGGACGTAATAATGCAGGGTCAAGAACATCTGCACGGTTAGTCGC 67653 Query 10846 CGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATT 10905 || ||||| | || || | | ||||| |||||||| ||| ||| | ||| || Sbjct 67652 TGCAATGACGATAATACCTTCATTGCCTTCAAAACCATCCATTTCAACCAACATTTGGTT 67593 Query 10906 GATGGTTTGTTCGCGTTCATCATTCGCG-GGCATACCACCCGCACTGCGTTGCTTACCGA 10964 | ||||| ||||||||||| | || || || ||| || | ||||| ||||| Sbjct 67592 CAATGTTTGCTCGCGTTCATCGTGACCGCCGCCTA-AACCTGCGCCACGTTGACGACCGA 67534 Query 10965 CGGCGTCAATTTCATCGATGAAAACGATACACG--GTTGATTTTCACGGGCAACTTCAAA 11022 | || ||||| |||||||| || | || || | | || |||| | || ||| || Sbjct 67533 CCGCATCAATCTCATCGATAAAGATAATGCAAGGCGCTGCTTTTTTC--GCTTGTTCGAA 67476 Query 11023 GATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAA 11070 ||||| || || | ||||| ||||| ||||||||||| || || Sbjct 67475 CATATCACGAACACGAGATGCACCAACACCGACAAACATTTCAACGAA 67428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597340809166040