Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1348 152 5e-32 seq964 111 2e-19 seq1190 86.0 6e-12 >seq1348 Length=1847788 Score = 152 bits (168), Expect = 5e-32 Identities = 375/561 (67%), Gaps = 17/561 (3%) Strand=Plus/Plus Query 154587 GACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCAC 154646 || ||||| || ||||| || || || |||| | |||| ||||| |||| ||| Sbjct 1699077 GAGGCCAAATTACAAACAGCTATCTCATCAGGGGCAGAATATTCTACAATCTCTGTGCAT 1699136 Query 154647 AAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTCT 154706 || || ||||| ||||||||| | ||||| ||| || |||| |||||| || ||| Sbjct 1699137 AAGTTGCTGCACTTAATGGTGCCAATGTTTTGCTGGTTGCTTTTGCGGTTGCAAGCATCT 1699196 Query 154707 TTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATAATTGTGCGAAACAGA 154766 |||||||| || || || || || ||||| ||||| | |||||| || || || || | Sbjct 1699197 TTGTACAACATATAGGGTGTACCGGTTTCAACTTGAGCTTCAATTAT--AGCAAACCAAA 1699254 Query 154767 CTTCGCGCCTCAAC-TTGAC-AAGTAAATCGATTTTCGCTC----TCATA-TTGTTCGTA 154819 | |||| | | ||||| | | | | ||||| || ||||| ||| | || Sbjct 1699255 ----GAGCCTGAGCTTTGACGGTGCGATTGGCTTTTCCTTCTTTTTCATACTTGGT-ATA 1699309 Query 154820 CAGTTTTTCAAACTCTAAACTGTACACGTCCGACAAACCGGGACAGCGGTCGGGACACAT 154879 || || ||| ||||| || | || ||| || ||||||||| || |||||||| Sbjct 1699310 CAATTCTTCGAACTCCTCACCCCAAACATCCTGCAGACCGGGACATTTGTGTGGACACAT 1699369 Query 154880 CAATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCACCCACAAAGC 154939 | ||||| | |||| || || |||||||||||||| || || | ||||| ||| Sbjct 1699370 TAGGGACCAGTCACCATTTTCTTCCACACGTTTCATAAACAAGTCGGGTATCCACAGAGC 1699429 Query 154940 GTACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCGCTTTAAATTCAAAAA 154999 || || | ||| | || | | ||||| ||| | ||| |||||||| |||||| Sbjct 1699430 ATAGAAAAGATCTCTGGCTCTATGCTCTTCCTTGCCGGTATTTTTCTTTAAATCCAAAAA 1699489 Query 155000 ATCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCCTTTGCGTTT--- 155056 ||| | || || | ||||| ||||| ||||| | || | || || |||||| Sbjct 1699490 TTCAAAAATATCTGAATGCCAAGGCTCCAAATAAATAGCAAAGGCACCAGGGCGTTTGCC 1699549 Query 155057 TCCTCCTTGATCCACGTGACGCACACAATTATTGTACACGCGCAACAATGGTTCCACGCC 155116 || || ||||| || | || | ||| || |||| | | || |||| ||| || Sbjct 1699550 ACCACCCTGATCAACATAGCGGGCTACATTGTTAAACACCCTGAGCATTGGTACCAGACC 1699609 Query 155117 GCTGGCCGTGCCGTTGGTGCC 155137 | | |||||||| ||||| Sbjct 1699610 ATTTGAGGTGCCGTTTGTGCC 1699630 Score = 136 bits (150), Expect = 4e-27 Identities = 531/833 (64%), Gaps = 4/833 (0%) Strand=Plus/Plus Query 153671 TTTGTCCACGGTAAATGCGATTGCATCCGCGGCCGGTTTAGTTCGCAAATAATACATGCC 153730 ||| || ||||||||| || |||| ||||| ||||| |||| ||||||||||||||| Sbjct 1698158 TTTATCTACGGTAAATTGAATAGCATTGGCGGCTGGTTTTGTTCTCAAATAATACATGCC 1698217 Query 153731 GGTTTTCAAACCACGTTTCCAAGTGTGCATGTGCACGCTAGTTAATAACGCGAAACTGGG 153790 ||| || || || |||||| | | | || | | || ||| || || | || Sbjct 1698218 GGTCTTTAAGCCTGATTTCCAGGCATAGAAATGTATGGAGGTCAATTTGCCGTAATTTGG 1698277 Query 153791 CTGCGCTATAAACACGTTAAACGACTGGCTCTGATCGATGAAAGCGCCGCGATCGGCCGC 153850 || || | | | || ||||| || || ||||| ||||||||||| || ||||| || Sbjct 1698278 CTCGGCCACATGTATATTGAACGATTGACTTTGATCTATGAAAGCGCCACGGTCGGCAGC 1698337 Query 153851 CATGTCAATCAAGTTTTTACTGCTCATTTCCCACACAGTTTTGTA--GACGGCTTTAATG 153908 ||| | || | | ||| | || ||||| || |||||||| || | | ||| Sbjct 1698338 CATTTGTATGGTGGTCTTAACGGAAATCTCCCAAACTGTTTTGTATAGATCACGTATATG 1698397 Query 153909 TCGTCGGGTATGCGATCAATTTTCTGCACACTGCCTCCGGCCGCTATAATGGAATTGCGC 153968 | | |||||| || || || | ||| | | ||||| ||| | Sbjct 1698398 T--TTGGGTATTTCTTCTATGGCTTGTATGGAGCCGCGATTGGAAATAATTTTATTTTTC 1698455 Query 153969 ATGTGGTCGTCGTACAAATTTAGTCGACATAAATCTTCAACCAAGTGCTGGTTAATTACT 154028 || | || || | |||| ||| |||||||| || ||| || || || | || Sbjct 1698456 ATTTCATCATCCCATAAATCAAGTTCGGTTAAATCTTTAAGCAAATGATGATTGACAACA 1698515 Query 154029 TGAAAATCGCCGGCCAATACGCGGCGCACATACAAATTGCTGGTGAACGGCTCGAACGAT 154088 | || || || | ||| || || | || | ||| |||| |||| || || ||| Sbjct 1698516 TTGAATTCTCCCGACAAAACACGTCTAGTGTAAATATTAGAGGTGTACGGTTCAAAGGAT 1698575 Query 154089 TCGTTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGGGCATATACGCCACCAACAAAGAG 154148 || |||||||||| ||||| || || | ||||||||||| || | | |||||| Sbjct 1698576 TCATTGTTGCCTAGAATTTGTGCGGTCGAAGCTGTGGGCATTGGGGCTAATAGCAAAGAA 1698635 Query 154149 TTTCGCAAACCGTGTTTTGCAATGCGCAATTTTAAATCTGCCCAATTCCACAAGTTGGTA 154208 || || | ||| |||| || | || || |||| ||| |||||||||| || Sbjct 1698636 TTGCGTACACCATGTTGACTGATTTTCTCCTTCAACTCTGACCAGTTCCACAAGTCTGTG 1698695 Query 154209 GGTTGCACGTTCCACATGTCGTATTGCAAAACACCCAAACTCGCCGGACTGTCACTATAA 154268 ||| |||||||| || ||||| | | |||| ||| | |||| | | |||| Sbjct 1698696 GGTGTTTTATTCCACATATCATATTGTAGTATACCCTTACTTACTGGACAGCCGGGATAA 1698755 Query 154269 CTAGAGTACGGCCCGTTCAGTTTTGCCAAGTCGCAACTGGCTTCTAACGCCGCATAGTAT 154328 | || | || | || ||||| || ||||| ||||| || || |||| || Sbjct 1698756 GTTTCATATGTGCCATCTTTTTCGGCCAATTCACAACTAGCTTCCAAAGCGCCATAATAA 1698815 Query 154329 ACGGTTTCGGCAATTTGTTTGTTTAACATTTTGGCTTTGTCACTTTCGTACGGCAATCCC 154388 | |||||| ||| |||| ||||||| || || ||||| || || || | | | Sbjct 1698816 ATAGTTTCGAAAATCTGTTGATTTAACAAAAATGCCTTTTCACTCTCATAGGGGTAACGC 1698875 Query 154389 AATATACAAAAAGCATCGGCGAGCCCTTGAATGCCCACTCCAACGGGTCTGTGTTTTAAA 154448 | || | |||| |||||| | || |||| || | |||| || | || ||| Sbjct 1698876 ATTAAAATCAAAGTATCGGCAAAACCCTGAACACCTATACCAATAGGACGATGACGCAAA 1698935 Query 154449 TTCGATTCTTTGGCAGCCTCCAGAGGATAATAATTGATATCGATAATTTTATT 154501 || || | | | || | || |||||| | ||||| ||||| ||||| || Sbjct 1698936 TTGGACTTTCTAGCTTCGGGCAACGGATAAAAGTTGATGTCGATGATTTTGTT 1698988 >seq964 Length=291957 Score = 111 bits (122), Expect = 2e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||||||||| || || ||||| | | |||||| ||||||| | || ||||| Sbjct 215608 GTAGATTCTTTTTGTATATTATAATCAGACAATGTGCGCCCGTCTTCCAATTGTTTGCCA 215549 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| |||| | || || || || || || ||||||||||| ||||| | |||| ||||| Sbjct 215548 GCAAAAATCAAACGTTGTTGATCTGGTGGGATTCCTTCTTTGTCTTG-AATTTTAGCTTT 215490 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| || | |||||| | || ||||| | ||| | ||| ||||| ||||| || Sbjct 215489 AACATTTTCAATAGTATCAGAAGGCTCAACTTCCAAAGTGATGGTTTTGCCAGTCAATGT 215430 Query 64426 TTTTACGAAAATTTGCAT 64443 || || || |||||||| Sbjct 215429 CTTAACAAAGATTTGCAT 215412 Score = 109 bits (120), Expect = 5e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || |||||||||||||| || ||||| | | ||||| ||||||| | || || ||| Sbjct 215380 GTAGATTCTTTTTGAATATTATAATCGGACAAAGTGCGTCCGTCTTCCAATTGTTTACCG 215321 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| |||| || || || || || || ||||| || || || ||||| ||||| ||| Sbjct 215320 GCAAAAATTAGACGTTGTTGATCTGGGGGAATACCCTCCTTATCTTGAATTTTAGCCTTA 215261 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | ||||| | || || || | || | ||||||||| || ||||| Sbjct 215260 ACATTTTCAATCGTATCCGAAGGTTCGACCTCAAGGGTGATGGTCTTGCCAGTTAAAGTC 215201 Query 64427 TTTACGAAAATTTGCATTTT 64446 || ||||| ||||||||||| Sbjct 215200 TTCACGAAGATTTGCATTTT 215181 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | ||| | || || || ||||| |||||||| || | | ||| || | ||| Sbjct 217094 AGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAGGTACGACCATCT 217035 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || || || || ||||| | || | || ||||| || || ||||| ||||| || || Sbjct 217034 TCCAGTTGTTTACCGGCGAAGATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTATCC 216975 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| |||||| ||| | ||||| | || ||||| | ||| | ||| Sbjct 216974 TGGATTTTAGCCTTTACGTTCTCAATGGTATCGGAAGGTTCGACTTCCAAAGTGATGGTT 216915 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||||||||| ||||| ||||| |||||||| Sbjct 216914 TTGCCGGTCAAGGTTTTAACGAAGATTTGCAT 216883 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 |||| ||| | || ||||| || || ||||||||||| | | |||||| | ||||| Sbjct 216863 ACTAAATGGAGAGTAGATTCCTTCTGGATGTTGTAATCCGAAAGGGTGCGTCCATCTTCC 216804 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 | || || |||||| | || | || || ||||| || ||||| ||||| || ||||| Sbjct 216803 AATTGTTTACCGGCAAAGATCAAACGTTGTTGGTCTGGGGGAATACCTTCCTTATCTTGG 216744 Query 64355 ATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTG 64414 || || ||| || || | ||||| | || ||||| | ||| | ||| || Sbjct 216743 ATCTTAGCCTTGACGTTTTCAATGGTATCGGAAGGTTCAACTTCCAAAGTGATGGTTTTT 216684 Query 64415 CCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||||||||| ||||| || ||||| Sbjct 216683 CCGGTCAAAGTTTTCACGAAGATCTGCAT 216655 Score = 100 bits (110), Expect = 3e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || ||||||||||||||||| ||||| | | ||||| | ||||| | ||| Sbjct 215842 TGAAGGGTAGATTCTTTTTGAATGTTATAATCGGATAAAGTGCGGCCATCTTCCAACTGT 215783 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || || || |||| | ||||| || || || ||||| |||||||| ||||| | |||| Sbjct 215782 TTACCAGCGAAAATCAAACGCTGTTGATCTGGGGGAATACCTTCTTTGTCTTGGA-TTTT 215724 Query 64361 TGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 ||||| ||| || | ||||| | || || || | || | || || || || Sbjct 215723 AGCTTTAACATTTTCTATAGTATCCGAAGGTTCAACCTCCAATGTAATTGTTTTACCCGT 215664 Query 64420 CAAAGTTTTTACGAAAATTTGCAT 64443 || ||||| |||||||||||||| Sbjct 215663 TAATGTTTTAACGAAAATTTGCAT 215640 >seq1190 Length=275307 Score = 86.0 bits (94), Expect = 6e-12 Identities = 142/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || |||||||||||||| |||||||| | || || || | ||||| | || || || Sbjct 186869 GTGGATTCTTTTTGAATATTGTAATCAGAGAGAGTACGGCCATCTTCCAATTGTTTTCCA 186810 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || |||| | || || || || || |||||||||||||| || || | | || ||||| Sbjct 186809 GCGAAAATCAAACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCCTG-AATCTTGGCTTT 186751 Query 64367 -ACAACCTCCACTGTATC-ACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAG 64424 ||| || | || || |||| || || || | ||| | |||||| || || | | Sbjct 186750 GACATTTTCAATAGTGTCGGACGGC-TCGACCTCAAGAGTGATGGTCTTACCCGTTAGGG 186692 Query 64425 TTTTTACGAAAATTTGCATT 64444 |||| || ||||| |||||| Sbjct 186691 TTTTGACAAAAATCTGCATT 186672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499634101355720