Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_010583.1 Length=111382 Score E Sequences producing significant alignments: (Bits) Value seq87 147 2e-30 seq253 118 8e-22 >seq87 Length=489008 Score = 147 bits (162), Expect = 2e-30 Identities = 426/648 (66%), Gaps = 7/648 (1%) Strand=Plus/Minus Query 50682 GTTACACCGTAAATGGATATGCAATAGCAGGATGGTGTTCATAGCCACGAACAGTAAAAT 50741 |||| ||||||||||| ||| ||| || |||| || ||| || || || ||||| Sbjct 413669 GTTATACCGTAAATGGGTATTTAATCGCTTCATGGCATTGATAACCTTCAAGAGAAAAAT 413610 Query 50742 CATCCTTACTTACCCACGTTAATACATCATCCAAAGTTCTAATATTTGGATTGATTTCTA 50801 |||| | ||||||| ||| | ||| || || ||| |||| | || || || || Sbjct 413609 CATCAGTGGTTACCCATGTTTCCAGATCTTCTAACGTTTTAATTTGAGGGTTTATCGTTA 413550 Query 50802 AAGTAGGAGGTGCAAAAGGTTCACGATCGAATTGCTTGTGCTCCATCAGAACATTATACT 50861 | | || |||||||| || || | || || | |||||| || | | Sbjct 413549 ATGATGGTAAAGCAAAAGGCTCGCGTTTTAACTGAACATCGCGCATCAGTGG--TA-ATT 413493 Query 50862 GATCTTCATAGATATGAAGATTAATAATCTTTTGACGAGCAATACCTGGCTTAAGACCTG 50921 | | |||||| ||||| ||| | ||| || ||| || |||| || | | |||| | Sbjct 413492 GGTTTTCATAAATATGTGCATTCACAATTTTATGATACGCCTTACCCGGTTGATGACCCG 413433 Query 50922 TAATCTGTGCCATAATAGCTAGAAGTGCATAGCATTGCACCATATTAAATACTTGGCCCA 50981 ||||| | ||||| | ||| || | | | ||||| || ||||| || | Sbjct 413432 TAATCCGCGCCATCAAAGCGAGTAACACGAAACATTGTACTTGGTTAAAATTCAATCCAA 413373 Query 50982 GCAAGAAATCATTAGACCTCTGGAAAGAGTTTAGGTATAGTGTATCACCTAAAATAGAGA 51041 | | ||| | | || | ||| ||| || || |||||||| | | || | Sbjct 413372 GTGGTACATCGCAACTACGTTGATAGGAGGTTAAGTGCAGAGTATCACCGAGCAGTGAAA 413313 Query 51042 ATTGATGGGTATGCATACACGGACGTAGGCATCCTTTACGAAATTCCCCACGGGTTCCAA 51101 | ||| ||||||||||| || |||| |||||| | |||||| || || || || Sbjct 413312 AAGTATGAGTATGCATACAAGGCCGTAAGCATCCCATTTCAAATTCACCT-GGATTATAA 413254 Query 51102 AAGTTAAA-ATTTCTCCACGATCGTCAATCCCTCTTTTCAAATTATGATAGACTTTGGCT 51160 || ||| ||||| | || || ||||| || |||| || |||| | ||||| Sbjct 413253 AACGTAATGATTTCAGCGCGGTCATCAATACCATTTTTTAAGTTATTAACCACTTTTTTA 413194 Query 51161 AACTGATCAAATACCATACCATCAGAATTAGTCCAATGA-CGTCCTTGAACACCATAGAC 51219 | |||||| | | ||||||||| ||| ||| || ||||| |||||||| || Sbjct 413193 AGCTGATCGAGATGCGTACCATCAGGCCGCTGCCA-TGAGCGCCCTTGGACACCATAAAC 413135 Query 51220 TCGTCCCATATCATCCTCGCCTTTACGGAATGGATTACCTAGCCAGGCAATATTTTCATT 51279 || ||||||||||| || ||||||||| ||| ||| ||||| || ||| ||||| Sbjct 413134 GCGCCCCATATCATCTTCACCTTTACGGTGTGGGTTATTCAGCCAAGCTTGATTGTCATT 413075 Query 51280 TGCATTAGCATTCCATGTATTAACACCAATAGCGCGGAATTGTGCTGC 51327 ||||| ||||||||||||||| || || | |||||||| ||||| Sbjct 413074 CGCATTTGCATTCCATGTATTACAGCCGATTTCACGGAATTGAGCTGC 413027 >seq253 Length=360942 Score = 118 bits (130), Expect = 8e-22 Identities = 491/761 (65%), Gaps = 29/761 (4%) Strand=Plus/Minus Query 57464 TAACTGTTGCCTGGTTGCTTTGGAAGATATGTTGAAGAATGGTATGAAGGTTGGTAATGC 57523 ||||||| ||| ||| | | |||| ||||| | ||||| | || | |||||||| Sbjct 105587 TAACTGTATGCTGATTGATCTTGAAGGCATGTTAACTAATGGGTTTAAAATGGGTAATGC 105528 Query 57524 TGAAATCAGTACACCAAACTCTATTACTACTGCGGCTGCTATTACAGCTCAGATTATCAC 57583 ||||| | || || || ||| | ||||| | || | ||||| || |||||| | Sbjct 105527 CGAAATAGAGCCTCCTAAATCAATTTCCACTGCCACCGCAGTGACAGCCCAAATTATCGC 105468 Query 57584 TCAAGTTAGCTC-CCATCAGTATGGTGGTACTTCTGTAGACCGATTAGATGAAGTATTGG 57642 |||||| |||| |||| |||||||| || | | |||| | |||||| | | | Sbjct 105467 TCAAGT-AGCTAGCCATATTTATGGTGGCACCACCATCAACCGCATTGATGAAATCCTTG 105409 Query 57643 CTCCTTATGTTCGTAAGTCTTACGATAAGAATCATGCGTTTGCAAAGCGTTGGACTAAGG 57702 |||||||||| | | || || || ||| || | |||| | | Sbjct 105408 CTCCTTATGTCCACATCAGCTATGAAAAACATCTAAAAACAGCGATCAATTGGGGCATTG 105349 Query 57703 ATGAAGCCAAAGCATCTG-TAATGGCTACGGAAATGACTGAGAAAGAAGTGTACGATGCC 57761 | || || |||| | || | || || | || || |||||| ||||||||| Sbjct 105348 AAGATGCGAAAGGCTATGCTGATAGCCAA-------ACCGAAAAAGAATGTTACGATGCC 105296 Query 57762 TGTCAAGGTCTAGAATATGAAATCAATACGATGTTCAACTCTAATGGTCAGAGTCCATTT 57821 | ||| || ||||| ||| | || || || | | | |||||||| | || || Sbjct 105295 TTCCAATCCCTTGAATACGAAGTGAACACACTGCATACCGCCAATGGTCAAACCCCCTTC 105236 Query 57822 ATTACCTTTGGGTTTGGTCTAGGAACTTCTTGGGAAGCACGTCTTG-TACAGAAAGCAAT 57880 | ||||||||||||||| |||| || || |||||||| |||| | || || | || Sbjct 105235 GTAACCTTTGGGTTTGGTTTAGGCACATCGCAAGAAGCACG-CTTGATCCAACAATCCAT 105177 Query 57881 CCTAGAAGTGCGTATGGATGGTTTGGGTATCAA---TAAACGTACTGCTATCTTCCCTAA 57937 ||| || ||||| | ||| || |||| || |||| ||||| | |||||||| Sbjct 105176 TCTAAAAAACCGTATCGCTGGGTTAGGTAAAAATCGTAAA---ACTGCCGTTTTCCCTAA 105120 Query 57938 ACTGGTATTTGTTCTGCGAGATGG-CGTAAACATGAAGCCTGGAGATGTCAACTACGATA 57996 | | || |||| | | | | || | ||| || || ||| ||| ||||| |||| Sbjct 105119 ATTAGTGTTTGCTATTAAAAAAGGCCTTAATCACCAA-TATGGTGATCCTAACTATGATA 105061 Query 57997 TCAAGAAGTTGGCTATGAAGTGTACTGCCGAACGTATGTATCCTGACTATATCAGCTATG 58056 |||| |||| || | ||||| | | |||| |||||||| ||| | | ||||| Sbjct 105060 TCAAACAGTTAGCATTAGAGTGTGCGAGCAAACGCATGTATCCCGACATCTTAAACTATG 105001 Query 58057 ATAAGGTTGTAGAAGTTACGGGAGACTACAAAGTCTCTATGGGCTGTCGTTCATTCCTGG 58116 | || ||||| || || ||||| | ||| | |||||||| || ||| | | Sbjct 105000 ACAAAGTTGTCGATGTAACGGGCTCGTTTAAAACGCCAATGGGCTGCCGCAGCTTCTTAG 104941 Query 58117 CTG-CTGCG--GAAGATGGTGA--AACTTC----TGGTCGTAACAACTTAGGCGTTGTTT 58167 || || || ||| |||| | || ||| ||| ||||| || ||||| || || Sbjct 104940 GTGTCTACGAAGAAAATGGCCAACAAATTCATGATGGCCGTAATAATTTAGGTGTCATTA 104881 Query 58168 CCGTAAACCTTCCTCGAATCGCTATCGAAGCGGAAGGAAAT 58208 | | ||||| || || || || || |||||| |||| ||| Sbjct 104880 GCCTTAACCTGCCGCGTATTGCCATTGAAGCGCAAGGCAAT 104840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356290161508199