Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_011048.1 Length=19282 Score E Sequences producing significant alignments: (Bits) Value seq1089 179 5e-41 >seq1089 Length=16580 Score = 179 bits (198), Expect = 5e-41 Identities = 693/1073 (65%), Gaps = 23/1073 (2%) Strand=Plus/Plus Query 1447 CAACTATATCTTTTATTACATCAGGTATCTCTGTACCCGTTAAATGTATGCTGTCAGTAT 1506 |||| |||||||| ||| || || | ||| ||| ||| || || || || | Sbjct 11462 CAACAATATCTTTGATTGATTCTGGAACGTCTAAACCTTCTAAGTGCATTGAATCGGTGT 11521 Query 1507 CACAGTATATTATCCGATCATAACAAGCCTGTGCCGCTGTAATTGTCGTGTATCTAGCCC 1566 |||| || || || |||||||| || || || |||||| || || |||||||||| Sbjct 11522 CACAATAAATAATTCGATCATAGCACTTTTGCGCACTTGTAATGGTGGTATATCTAGCCC 11581 Query 1567 ATGCAGTGATGAAAACGCCCATAGGTGTATAAACAGGGTCTTTTGTTTCCTCTTCTCCAA 1626 ||| || ||||| | || | ||| ||||||||||| || ||| ||||| | Sbjct 11582 ATGACGTAATGAATATACCTACAGGAGTATAAACAGGATCACGAAATTCTTCTTCCATTA 11641 Query 1627 GTCTGAAACCTAGCGCCCCATTCTCTTTTAAATAAGGGACTTTCCCTGTAACATCAGGGT 1686 | ||||| | ||| | ||| ||||||||| ||| ||||||| || || | Sbjct 11642 ATTCAAAACCGTTTGACCCGTCCTCACGTAAATAAGGACGTTTGCCTGTAATGTCTGGAT 11701 Query 1687 TACTAGCGAATTTACCGTATAGACTGTTTAACATCAGTTTTGCTAGTTGCTTGATC-GCT 1745 | | || ||||| || || | | || | ||| | |||||||| | |||| | ||| Sbjct 11702 TGGTTGCAAATTTTCCATACAAAGAATTAAGCATTAATTTTGCTA-TAGCTTTCTTTGCT 11760 Query 1746 CCTTCTGATGTCGTCTTGATGTACGTCCATTTATCTATAAAATCTTTAAACAAACCTGTA 1805 ||| | || | | || | || ||||||| || || | | | |||| | | Sbjct 11761 CCTGCCGACATGTTTTTAACTAACATCCATTTGTCAATGTATTGTCTAAATGCTTGTTTC 11820 Query 1806 GTTGCTT-TAAATTTTAAGCCGCTGATATATTCAACGTTATATAAATCGTAGTGTTCTTT 1864 || |||| |||| || | || | | | || || | || | || ||||||||| | Sbjct 11821 GT-GCTTCTAAACTTCCAACCTTTTTCAAACTCTACATCGTAGACATGATAGTGTTCTCT 11879 Query 1865 CATTAATTCTAGGTCTACATTTGACAACCAGAGGTCGGCTATCTCCCCGCCGCTACTTTT 1924 |||| ||| || ||| |||| | | || ||| |||| | ||| |||| Sbjct 11880 GATTAGTTCCCAATCAACACTTGATA--CGGAAATCGT-TATCCGTTCACCGTTACTAGA 11936 Query 1925 ---TAGGTACTCATTACCTTTATAA---AACCTACTTCTTTTTATCTGTATAGTGGGTAT 1978 |||||| ||||| ||||| || || | || |||||| || || || || || Sbjct 11937 CGATAGGTATTCATTTCCTTTGAAACCGAATCGGCTGTTTTTTAATTGAATCGTAGGAAT 11996 Query 1979 ATAGCCCTCTTTCAATTCGAACTCACATCTGATATGCTGTATGTGTAGTGGGTAATCTTC 2038 ||| |||||||||||| ||||| || | | | || || | || |||| || Sbjct 11997 ATAATTCTCTTTCAATTCAAACTCGAATGTTAGTTTTTGAATATATAAGGGGTGTGATTT 12056 Query 2039 GTCCCAAACGTATTTACCCTCGAATACTATAGGTTCACCATATGGAAGGAGACGGCTATA 2098 ||| |||| |||| ||| || || ||||| ||||| | || | ||| ||| Sbjct 12057 GTCATAAACATATTCACCTTCAAACGGAATAGGAACACCACAAGGCAAATCTCGGTCATA 12116 Query 2099 CATCTGTGCAGGATATAGACTATTAACATCGAAGACCATGCCTTCTCCGATTT-CTTTTT 2157 ||| |||| ||||| || ||||||||| || || || || ||| | | |||||| Sbjct 12117 CATTTGTGACGGATACAGGGAATTAACATCAAATACAATACCGTCTTTTACATACTTTTT 12176 Query 2158 CTTTGAACCTATCA---TTTAACCATGTAAAACCACCTCTATAGGCGTATCTCACTTCCT 2214 | || | || || || |||||||||||||| || | |||||| | ||| | ||| | Sbjct 12177 CGTTCCATATA-CAGGGTTCAACCATGTAAAACCGCCACGATAGGCTTTTCTAATTTCTT 12235 Query 2215 TATCGAGTCCAAGACTCAATGTAGGAAACACCTTTTTGAATTTCTTAGTGGTTATAATAT 2274 || | | | | || |||||||| ||||| | | ||| | ||| || Sbjct 12236 CATTTAATTCTAATGAAAAAACAGGAAACAACTTTTCGTAAAGTTTACCAGACATATTAA 12295 Query 2275 CCTTGAAACCTTTTAGACTGTCACTGCCTGCTGTCAT-CCGGTCTAAACCTTGCTTAAAC 2333 | || | | ||| || | || |||||| || || ||| |||||| | Sbjct 12296 CA---AATTCATCAAGAGCATCCTTACCGTTTGTCATGCCTGT-TAACCCTTGCACAGTT 12351 Query 2334 TGAATTAACAGAGCTTCCGCAATAATCTGAATATCGTTTTTAATATAGGCGTATTCTTCG 2393 |||| | | ||||| || ||||| ||||||||||||||||| || |||||||| Sbjct 12352 TGAACTTCTAATGCTTCTGCTATAATTTGAATATCGTTTTTAATGTATTGATATTCTTCA 12411 Query 2394 GGTGTTATCTTATAGCCGACTGGTCTTTCTTTGTGGTAATCAATATCACCTTTAAGAACA 2453 |||| ||| || | |||||| ||| || ||||| ||||| ||||| | ||| Sbjct 12412 TCGTCAATCTCATAACCAATTGGTCTAGGTTTATGATAATCGATATCGCCTTTCAAAACG 12471 Query 2454 GTTAGTTTAAAGTCTTTAGCTATCTTCTTAACAGGAAACGGTAGTTTCTTTAA 2506 | | ||| || |||||| |||| || |||||| || || ||||||||||| Sbjct 12472 TTCAATTTGAAATCTTTACCTATTTTACGAACAGGGAATGGAAGTTTCTTTAA 12524 Score = 152 bits (168), Expect = 6e-33 Identities = 360/533 (68%), Gaps = 18/533 (3%) Strand=Plus/Plus Query 9870 CTATACAACTATAGAGATATGAAGGAAGAAGATATGGGTGTTGTTATCTACAACAATGAC 9929 ||||||||||| || |||||||| ||| || | ||||||||| | || | |||||||||| Sbjct 4631 CTATACAACTACAGCGATATGAATGAAAAAAACATGGGTGTTTTAATATGCAACAATGAC 4690 Query 9930 ATGGCTTTCCCTACCACGCCAACGCTAGAATTGTTTGCGGCTGAATTGGCTGAATTAAAA 9989 || || ||||| || ||| | || ||||||| | ||| | || ||| | ||| Sbjct 4691 TTGCGTTATCCTACAACTGGAACAATTGATATGTTTGCAGAAGAACTTGCAGAAATTAAA 4750 Query 9990 GAAATCATATCGGTCAACCAAAACGCTCAAAAGACACCCGTCTTAATTAGAGCAAATGAC 10049 | || | | ||||| | ||||| ||||| ||||| || || ||| | |||| Sbjct 4751 GCCATTACAAGAGTCAATCTGAACGCACAAAAAACACCAGTTTTGATTGCTGTCGATGAT 4810 Query 10050 AATAACCAACTGAGCT---TAAAACAAGTGTATAACCAGTATGAAGGTAATGCCCCTGTT 10106 || |||| || | ||||| | || ||||| |||||||| ||||| |||| | Sbjct 4811 TTAAATAAACT-TTCTATGTTAAACA--TTTACAACCAATATGAAGGCAATGCTCCTGCT 4867 Query 10107 ATC-TTCGCTC--ACGAAGCTCTCGACAGTGACTCTATAGAAGTGTTTAAGACTGATGCT 10163 ||| || || | |||||| | ||| ||||| |||| || || || ||||| Sbjct 4868 ATCGTTACATCAAAAGAAGCT---AATCTTGAATCTATTAAAGTATTCAAAACAGATGCA 4924 Query 10164 CCCTATGTGGTGGACAAGTTAAACGCTCAGAAAAATGCAGTATGGAATGAGATGATGACT 10223 || || || || ||||| | || | ||| | ||| | ||||||||| | |||||| Sbjct 4925 CCGTACGTTGTTGACAAAATCAATACACAGCGTATGGCAATCTGGAATGAGTTCATGACT 4984 Query 10224 TTCCTTGGCATTAAGAACGCTAACCTAGAGAAGAA--AGAGCGCATGGTTACGGATGAAG 10281 || || || ||| | ||| | || || ||| || || |||||||| |||||||| Sbjct 4985 TTTCTCGGTATTCAAAACACCAA--TAATGAAAAACGTGAACGCATGGTGGAGGATGAAG 5042 Query 10282 TTTCCAGTAACGATGAACAGATCG-AGTCTAGCGGCACTGTATTTTTGAAGTCGAGGGAA 10340 | ||| || ||| || ||| | || | || || | |||||||| || ||| Sbjct 5043 TCAACAGCAATAATGGTCAAGTCGAAAACTCGACAAACATTA-TGTTGAAGTCAAGAGAA 5101 Query 10341 GAAGCATGTGAGAAGATTAATGAGCTATATGGTCTCAATGTTAAAGTTAAATT 10393 |||||| | | |||||||| || | || ||| | | ||||||| ||||| Sbjct 5102 GAAGCAGTTAAAAAGATTAACGAATTGTACGGTTTAGACATTAAAGTAAAATT 5154 Score = 111 bits (122), Expect = 2e-20 Identities = 357/546 (65%), Gaps = 16/546 (3%) Strand=Plus/Plus Query 5597 TCATACGACATCGTGAATGCCATTCGTAACAG----TCAGGGCGATAACTTCAAAAGTTA 5652 ||||||||||| ||||||||||||| ||||| ||| | | | ||| || || Sbjct 1205 TCATACGACATTATGAATGCCATTCGCAACAGCGCTTCA---CCA-CAGTTCCAACAATA 1260 Query 5653 TGTGCCGCTAGCAACTGCGAACAACGTCGCAGAAGTCGGGGCAGGTATCCTGATCAATCA 5712 ||| || ||||||| ||| | ||| ||||| |||| || || || | || | || || Sbjct 1261 TGTACCACTAGCAAATGCTGAAAACATCGCACAAGTAGGTGCTGGACTTCTAGTAAACCA 1320 Query 5713 AACGGTACAAAATGATTTCATCACGTCCCTTGTTGATCGTATTGGACTTGTGGTTATCCG 5772 || | ||||| || ||||||| || || ||||| ||||| | |||| | ||| | | Sbjct 1321 AAATATCCAAAACGAATTCATCATTTCACTAGTTGACCGTATCGCACTTTTCGTTCTAC- 1379 Query 5773 ACAG--GTGTCGTTAAACAACCCGTTGAAG--AAATTCAAGAAAGGTCAAATTCCTCTCG 5828 |||| ||| | |||| ||| | |||||||| || |||||| | | Sbjct 1380 ACAGCAAAGTCAT--GACAA-ATGTTCTCGGTAAATTCAAACGTGGCACAATTCCGTTGG 1436 Query 5829 GTCGTACTATCGAAGAGATTTATACAGACATCACAAAAGAAAAACAGTACGATGCTGAGG 5888 || | ||| ||||| | |||| ||| | | |||| || ||| ||| | || | Sbjct 1437 GTTCTCGTATTGAAGAAACATATATTGACCTTGTACCAGAACAAGCGTATGATCCAGATG 1496 Query 5889 AAGCCGAACAGAAGGTATTTGAACGTGAAATGCCGAACGTCAAAACTCTCTTCCACGAGA 5948 |||||| | || || |||||||||| || | |||||||| || ||||| || | Sbjct 1497 GTGCCGAATCAACTGTTTTCAAACGTGAAATTCCAGATGTCAAAACACTGTTCCATGAAA 1556 Query 5949 GAAACAGACAGGGCTTTTATCATCAAACAATCCAAGATGACTCACTCAAAACTGCATTTG 6008 || | || || || | ||||| || ||||| | | ||| || || | Sbjct 1557 TCAATCGTCAATCTTTCTACAAACAAACCATTCAAGACGCAAGTTTGCAAAAAGCGTTCG 1616 Query 6009 TATCATGGGGTAATTTCGAAAGCTTTGTTTCTTCTATTATTAATGCTATCTACAATAGTG 6068 |||||||||| | || || | || |||||| | ||| | || || ||||| || Sbjct 1617 TATCATGGGGCGAATTTGATCGTTTCGTTTCTGGCACAATTCAAGCCATGTACAACAGCA 1676 Query 6069 CTGAAGTAGACGAATACGAATATATGAAATTGTTAGTTGACAACTACTATTCAAAAGGGT 6128 | |||| || |||| | |||| |||||| || || | || ||| ||||||||| | Sbjct 1677 ATCAAGTTGATGAATTCAAATACATGAAACTGCTAATCGATTCTTACGCTTCAAAAGGTT 1736 Query 6129 TGTTCA 6134 |||| Sbjct 1737 ATTTCA 1742 Score = 87.8 bits (96), Expect = 2e-13 Identities = 129/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 10579 CTATTCGACTTTAACTATCCTATCTTTGACGAGTCATACCGTAC-CATTTTCGAGACACA 10637 || ||| |||| || || ||| ||||| || ||||| | || ||| || || | Sbjct 5304 CTGTTCAACTTCAATTACCCTTTCTTTTCAGAAGCATACAAAAAACAATTT-GAAACCAA 5362 Query 10638 TTTCATTCGCAATTTCTATATGCGGGAGATCGGTTTTGAAACAGAAGGTTTGTTCAAGTT 10697 ||| || || ||||||| ||||| || || || |||||||||||||| | || ||||| Sbjct 5363 TTTTATACGTCATTTCTACATGCGTGAAATTGGGTTTGAAACAGAAGGACTTTTTAAGTT 5422 Query 10698 TCATTTAGAAACATGGCTCATGATTAATATGCCCTACTTTAACAAGCTTTTTGAAAGTGA 10757 || | ||||||||| | | ||||| ||||| || | ||||| | |||||||| || Sbjct 5423 CTATCTGGAAACATGGTTAAATATTAACATGCCTTATTGGAACAAAATGTTTGAAAGCGA 5482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 61582780232655