Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq1348 141 9e-29 >seq1348 Length=1847788 Score = 141 bits (156), Expect = 9e-29 Identities = 465/718 (65%), Gaps = 16/718 (2%) Strand=Plus/Minus Query 93928 CCACAGATGTCTTCGTGTTTCCTGATGACGAACAAGGCCGACTCCATCTCCGGAATTTTC 93987 || ||| |||| ||||||||| | |||| | |||||| || || || |||||| Sbjct 1699783 CCGCAGTTGTCGTCGTGTTTCTTATTGACCATGGTGGCCGATTCTATTGAGGGTATTTTC 1699724 Query 93988 GA--CAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGGGGGAATCGGGATCAGTG 94045 | ||| | | | ||||| | || || |||| ||||| || || || || | | Sbjct 1699723 AAGTCAG--TGGAACAATGTGCCATGATATCCAAATCGGCGGGTGGTATTGGCATAAACG 1699666 Query 94046 TCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCC 94105 | ||| | || | |||| ||| | | ||| ||| || || |||||||| || || | Sbjct 1699665 TACACTGCATAAGGGCCAAGGGCACTTCCATTGACGGCACAAACGGCACCTCAAATGGTC 1699606 Query 94106 TCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGA 94165 | || || |||||| |||| || ||||| | || ||||| || || ||||||||||| | Sbjct 1699605 TGGTACCAATGCTCAGGGTGTTTAACAATGTAGCCCGCTATGTTGATCAGGGTGGTGGCA 1699546 Query 94166 GGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCA 94225 | ||| | || || | ||| | ||||| ||||| | || | | || Sbjct 1699545 AACGCCCTGGTGCCTTTGCTATTTATTTGGAGCCTTGGCATTCAGATATTTTTGAATTTT 1699486 Query 94226 TCGACCTGCGAAAGAACCA---CGGCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACG 94282 | || | |||||| | |||||| || | | || |||||||| || ||||| | Sbjct 1699485 TGGATTT---AAAGAAAAATACCGGCAAGGAAGAGCATAGAGCCAGAGATCTTTTCTATG 1699429 Query 94283 CTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTT 94342 |||| ||| | || ||| | ||||||||||| || || |||| | |||| || Sbjct 1699428 CTCTGTGGATACCCGACTTGTTTATGAAACGTGTGGAAGAAAATGGTGACTGGTCCCTAA 1699369 Query 94343 TTTGTCCCAATGAATGTCCCGGACTGTCCGACGTTTGTGGATCGCGTTTTGAAGACTTGT 94402 | ||||| | |||||||||| ||| || ||||| || | || ||||| |||| Sbjct 1699368 TGTGTCCACACAAATGTCCCGGTCTGCAGGATGTTTGGGGTGAGGAGTTCGAAGAATTGT 1699309 Query 94403 ATGCTCGTTACGAATCGCAGGGCAAGGCCA---GGAAGGTTATGGATGCTAGGAAGCTGT 94459 || | || ||| | || || |||| | | || | | ||| | || | Sbjct 1699308 ATACCAAGTATGAAAAAGAAGGAAAAGCCAATCGCACCGTCA---AAGCTCAGGCTCTTT 1699252 Query 94460 GGGATCAGATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACT 94519 || | || | || | || || || || ||||| ||||| || |||| ||| || Sbjct 1699251 GGTTTGCTATAATTGAAGCTCAAGTTGAAACCGGTACACCCTATATGTTGTACAAAGATG 1699192 Query 94520 CTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCA 94579 || |||| ||| ||||||||| || | || || ||| || || | |||| Sbjct 1699191 CTTGCAACCGCAAAAGCAACCAGCAAAACATTGGCACCATTAAGTGCAGCAACTTATGCA 1699132 Query 94580 CCGAGATTGTCGAGTATACTTCTCCGGACGAGATTGCTGTGTGTAACCTGGGCTCCAT 94637 | |||||||| || ||| || | || || ||||| ||||| ||||| ||| |||||| Sbjct 1699131 CAGAGATTGTAGAATATTCTGCCCCTGATGAGATAGCTGTTTGTAATTTGGCCTCCAT 1699074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494712606739480