Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1348 158 1e-33 seq1304 107 2e-18 seq964 96.9 3e-15 seq1190 91.5 1e-13 >seq1348 Length=1847788 Score = 158 bits (174), Expect = 1e-33 Identities = 677/1064 (64%), Gaps = 21/1064 (2%) Strand=Plus/Plus Query 152709 GCCGCAGGCTTTGTGCGCAAATAATACATGCCCGTTTTGAGGCCGCAGCGCCACGAGTAA 152768 || || || ||||| | ||||||||||||||| || || | ||| | ||| | || Sbjct 1698186 GCGGCTGGTTTTGTTCTCAAATAATACATGCCGGTCTTTAAGCCTGATTTCCAGGCATAG 1698245 Query 152769 TTGTGAATCGAAGTCATCACAGCGTACGTCGGTTGCGCCACGAACAGATTAAACGATTGG 152828 || || || |||| |||| | || | ||||| | ||| |||||||| Sbjct 1698246 AAATGTATGGAGGTCAATTTGCCGTAATTTGGCTCGGCCACATGTATATTGAACGATTGA 1698305 Query 152829 CTCTGATCTATGAAAGCGTTACGGTCGGCCGCCATCTCAATCATGCGTTTTGCCTTCATC 152888 || ||||||||||||||| ||||||||| ||||| | || || || | ||| Sbjct 1698306 CTTTGATCTATGAAAGCGCCACGGTCGGCAGCCATTTGTATGGTGGTCTTAACGGAAATC 1698365 Query 152889 TCCCAGGCGGTTTTGTACAAATTTTTAACGC-TATCC---GGTATACCTTCAATGTTCTG 152944 ||||| | |||||||| | || ||| ||| ||||| |||| ||| || Sbjct 1698366 TCCCAAACTGTTTTGTATAGATC----ACGTATATGTTTGGGTATTTCTTCTATGGCTTG 1698421 Query 152945 AATAGAGCCCTTGTGTGCAAAAATAGCGTTTCGTATTTCGGG----CGTGTA-CACGTTC 152999 || ||||| | | || ||| ||| ||||| | | | || |||| Sbjct 1698422 TATGGAGCCGCGATTGGAAATAATTTTATTTTTCATTTCATCATCCCATAAATCAAGTTC 1698481 Query 153000 AGTTTAATGAGGTCATCGATCAAGTACTGGTTGACCACTTGAAACTCGCCCGCCAACACT 153059 ||| ||| | | | ||| | || ||||| || | || || |||| ||| || Sbjct 1698482 GGTTAAAT-----CTTTAAGCAAATGATGATTGACAACATTGAATTCTCCCGACAAAACA 1698536 Query 153060 CGTCTCAAATATACATTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGA 153119 ||||| || | ||| ||| | |||||||||||||| || |||||||| ||||| Sbjct 1698537 CGTCTAGTGTAAATATTAGAGGTGTACGGTTCAAAGGATTCATTGTTGCCTAGAATTTGT 1698596 Query 153120 GCCGTGGTTGCGGTCGGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGA 153179 || || | || || ||||| || | | ||||||||| || | || || | Sbjct 1698597 GCGGTCGAAGCTGTGGGCATTGGGGCTAATAGCAAAGAATTGCGTACACCATGTTGACTG 1698656 Query 153180 ATGTCGTCCTTCAACGCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCG 153239 || | ||||||||| | ||| | ||||| | | ||||| |||||||| || Sbjct 1698657 ATTTTCTCCTTCAACTCTGACCAGTTCCACAAGTCTGTGGGTGTTTTATTCCACATATCA 1698716 Query 153240 TACTGTAACACTCCTCGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGT 153299 || |||| | || ||| | |||| ||||| | | || || |||| || | Sbjct 1698717 TATTGTAGTATACCCTTACTTACTGGACAGCCGGGATAAGTTTCATATGTGCCATCTTTT 1698776 Query 153300 TGGGCCAGTTCGCAGCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTA 153359 | ||||| ||| || ||||| || | |||||||| || || |||||| || |||| | Sbjct 1698777 TCGGCCAATTCACAACTAGCTTCCAAAGCGCCATAATAAATAGTTTCGAAAATCTGTTGA 1698836 Query 153360 TTGAGAACGGCCGCTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCC 153419 || | | || | ||| ||||| || || |||| | | || | ||||| Sbjct 1698837 TTTAACAAAAATGCCTTTTCACTCTCATAGGGGTAACGCATTAAAATCAAAGTATCGGCA 1698896 Query 153420 AGACCCTGGATACCGACGCCGATGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCT 153479 | |||||| | ||| | || || || ||||| | ||| || || | Sbjct 1698897 AAACCCTGAACACCTATACCAATAGGACGATGACGCAAATTGGACTTTCTAGCTTCGGGC 1698956 Query 153480 ATGGGATAGTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATC 153539 | ||||| ||| ||||| ||||||||||| || | ||||| || | Sbjct 1698957 AACGGATAAAAGTTGATGTCGATGATTTTGTTGAGATTCTTGGTAATAACTTTTGTAACA 1699016 Query 153540 GCCTTAAGTTTCTCGAAATCATAGGTCATTTCGTCGACGCGTACGCATCGATTCACGGCA 153599 || | ||| | ||||||| ||||| |||| | || | || | ||| | |||| Sbjct 1699017 TTTTTCAATTTTTTGAAATCAAAGGTCTTTTCT--GGCGTG-ACAAACATATTAAGGGCA 1699073 Query 153600 ATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCG 153659 || || |||| |||||| || || |||| || | | | || | || ||||| | | Sbjct 1699074 ATGGAGGCCAAATTACAAACAGCTATCTCATCAGGGGCAGAATATTCTACAATCTCTGTG 1699133 Query 153660 CAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCG 153719 || | ||||||||| || ||| ||| | |||||||| ||||||||||| ||||| || Sbjct 1699134 CATAAGTTGCTGCACTTAATGGTGCCAATGTTTTGCTGGTTGCTTTTGCGGTTGCAAGCA 1699193 Query 153720 TCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTC 153763 |||||| | | ||| || ||| ||||| || ||||| | ||| Sbjct 1699194 TCTTTGTACAACATATAGGGTGTACCGGTTTCAACTTGAGCTTC 1699237 >seq1304 Length=336898 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || ||||||| | || |||||||| |||||||||||| | Sbjct 274173 CCACCACGAAGACGGAGTACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCGGAC 274232 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || | ||||||||| | |||| | ||| ||||| || || || Sbjct 274233 AAGGTGCGACCATCTTCCAATTGTTTACCAGCGAAGATCAAACGTTGTTGATCTGGGGGG 274292 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||||||||| |||||| || | | ||| | |||||||| | ||| || Sbjct 274293 ATACCTTCTTTGTCTTGGATTTTGGCCTTGACATTTTCAATGGTGTCGGAAGGCTCAACT 274352 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || |||||||| | |||||| || || |||||||| Sbjct 274353 TCCAAGGTAATGGTCTTACCAGTTAAAGTTTTGACGAAGATCTGCAT 274399 >seq964 Length=291957 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || ||||||||||| || || || | | | || || ||||||||||| || ||| Sbjct 215866 CCACCACGCAAACGCAATACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAATCGGAT 215807 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || || || | |||||||| | | || | ||||||||| || || || Sbjct 215806 AAAGTGCGGCCATCTTCCAACTGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGGGGA 215747 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||||||||| |||||| ||| | | ||| | || || | | || ||| Sbjct 215746 ATACCTTCTTTGTCTTGGATTTTAGCTTTAACATTTTCTATAGTATCCGAAGGTTCAACC 215687 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | |||||||| || | ||||| || ||||| |||||| Sbjct 215686 TCCAATGTAATTGTTTTACCCGTTAATGTTTTAACGAAAATTTGCATG 215639 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||| | || ||||| | | | ||||||||||| ||||||||||| Sbjct 217110 GCCTCCACGAAGACGTAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGA 217051 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||||| || || ||||||||||||| |||| | ||| || || || || || Sbjct 217050 CAAGGTACGACCATCTTCCAGTTGTTTACCGGCGAAGATCAAACGTTGCTGATCTGGGGG 216991 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||| || || |||||| |||| | || | ||| |||| | || || Sbjct 216990 AATACCTTCCTTATCCTGGATTTTAGCCTTTACGTTCTCAATGGTATCGGAAGGTTCGAC 216931 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| || |||| ||||| || || || ||||| Sbjct 216930 TTCCAAAGTGATGGTTTTGCCGGTCAAGGTTTTAACGAAGATTTGCAT 216883 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | |||||| |||||||| | | || ||||| || |||||||| || Sbjct 216881 CCACCACGGAGACGCAATACTAAATGGAGAGTAGATTCCTTCTGGATGTTGTAATCCGAA 216822 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || | ||||||||||| | |||| | ||| |||||||| || || Sbjct 216821 AGGGTGCGTCCATCTTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGGTCTGGGGGA 216762 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||| || || ||| || || | | ||| | ||| |||| | || || Sbjct 216761 ATACCTTCCTTATCTTGGATCTTAGCCTTGACGTTTTCAATGGTATCGGAAGGTTCAACT 216702 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| || |||| |||||| || || |||||||| Sbjct 216701 TCCAAAGTGATGGTTTTTCCGGTCAAAGTTTTCACGAAGATCTGCAT 216655 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||||||| || || ||||| | | || || ||||| || || || || Sbjct 215639 GCCACCACGCAAACGTAATACCAAATGCAATGTAGATTCTTTTTGTATATTATAATCAGA 215580 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || ||| ||| || | |||||| || | | | || | ||| ||||| || || || Sbjct 215579 CAATGTGCGCCCGTCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGG 215520 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||||||||| ||| |||| | ||||| | ||| | || || | | ||| | Sbjct 215519 GATTCCTTCTTTGTC-TTGAATTTTAGCTTTAACATTTTCAATAGTATCAGAAGGCTCAA 215461 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 | || | || | ||||| ||||||| || || ||||| || |||||| Sbjct 215460 CTTCCAAAGTGATGGTTTTGCCAGTCAATGTCTTAACAAAGATTTGCATG 215411 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||||||| | ||| || || | | || || |||||||| || || ||| Sbjct 215411 GCCACCACGCAAACGTAGAACCAAGTGGAGAGTAGATTCTTTTTGAATATTATAATCGGA 215352 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||| || ||| || | ||||||||||| | | |||||||| ||||| || || || Sbjct 215351 CAAAGTGCGTCCGTCTTCCAATTGTTTACCGGCAAAAATTAGACGTTGTTGATCTGGGGG 215292 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || || || ||| |||| | |||| | ||| | || || | | || | Sbjct 215291 AATACCCTCCTTATC-TTGAATTTTAGCCTTAACATTTTCAATCGTATCCGAAGGTTCGA 215233 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || ||||| | ||| || || || || ||||| Sbjct 215232 CCTCAAGGGTGATGGTCTTGCCAGTTAAAGTCTTCACGAAGATTTGCAT 215184 >seq1190 Length=275307 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 ||||| || || || | | || || |||||||| ||||| || | |||||| Sbjct 186887 CGCAATACCAAGTGCAAAGTGGATTCTTTTTGAATATTGTAATCAGAGAGAGTACGGCCA 186828 Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 || || | |||||| || | | || | ||| ||||| || || || || ||||||||| Sbjct 186827 TCTTCCAATTGTTTTCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATTCCTTCTTTG 186768 Query 138520 TCGGTGATTTTTTGTTTTAAT-TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAG 138578 || ||| | || | ||| | | ||| | ||||||| || ||| ||||| | || | Sbjct 186767 TCC-TGAATCTTGGCTTTGACATTTTCAATAGTGTCGGACGGCTCGACCTCAAGAGTGAT 186709 Query 138579 CGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGC 138617 || ||||| || || ||||| |||||||||||||| || Sbjct 186708 GGTCTTACCCGTTAGGGTTTTGACAAAAATCTGCATTGC 186670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496251773781360