Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq964 152 4e-32 seq1190 125 5e-24 seq1304 105 5e-18 >seq964 Length=291957 Score = 152 bits (168), Expect = 4e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| ||||| | || || || ||||||||||| |||||||| ||||| |||||| Sbjct 215866 CCACCACGCAAACGCAATACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAATCGGAT 215807 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | ||||| || ||||| |||||| | |||||||||||||| || ||| Sbjct 215806 AAAGTGCGGCCATCTTCCAACTGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGGGGA 215747 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| ||||| ||||| ||| ||| ||||||||||||| | ||| || Sbjct 215746 ATACCTTCTTTGTCTTGGATTTTAGCTTTAACATTTTCTATAGTATCCGAAGGTTCAACC 215687 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||| |||||||| || | ||||| || ||||||||||| Sbjct 215686 TCCAATGTAATTGTTTTACCCGTTAATGTTTTAACGAAAATTTGCAT 215640 Score = 150 bits (166), Expect = 1e-31 Identities = 173/231 (75%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| ||||| | ||| || ||||| | ||||| ||||||||||| || ||||| Sbjct 215640 TGCCACCACGCAAACGTAATACCAAATGCAATGTAGATTCTTTTTGTATATTATAATCA- 215582 Query 15008 TGAGAATTCTCGC--GTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTT 15065 || ||| ||| |||||| |||||||||||||| | |||||||| ||||| || Sbjct 215581 -GACAATGTGCGCCCGTCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGG 215523 Query 15066 TGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTC 15125 ||| |||||||| ||||| |||||| ||| ||| |||| |||||||| | || Sbjct 215522 TGGGATTCCTTCTTTGTCTTGAATTTTAGCTTTAACATTTTCAATAGTATCAGAAGGCTC 215463 Query 15126 TACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || |||||||| || |||| || || ||||| |||||||| Sbjct 215462 AACTTCCAAAGTGATGGTTTTGCCAGTCAATGTCTTAACAAAGATTTGCAT 215412 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || |||||||| || ||||| || || || ||||||||||| || | | | ||| Sbjct 216866 AATACTAAATGGAGAGTAGATTCCTTCTGGATGTTGTAATCCGAAAGGGTGCGTCCATCT 216807 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || |||||||| || || | |||||||| |||||||| ||||| |||||||| || Sbjct 216806 TCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGGTCTGGGGGAATACCTTCCTTATCT 216747 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 || || || || |||| || |||||| | ||| || || || || |||||| Sbjct 216746 TGGATCTTAGCCTTGACGTTTTCAATGGTATCGGAAGGTTCAACTTCCAAAGTGATGGTT 216687 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || |||| |||||| || || || |||||| Sbjct 216686 TTTCCGGTCAAAGTTTTCACGAAGATCTGCATA 216654 >seq1190 Length=275307 Score = 125 bits (138), Expect = 5e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 14980 GTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCA 15039 || || |||||||| || |||||||| |||| | | | ||||| |||||||| ||| Sbjct 186869 GTGGATTCTTTTTGAATATTGTAATCAGAGAGAGTACGGCCATCTTCCAATTGTTTTCCA 186810 Query 15040 GCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTT 15099 ||| | |||||||| ||||| || |||||||||||| ||||| ||| ||| ||| Sbjct 186809 GCGAAAATCAAACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTG 186750 Query 15100 ACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTT 15159 ||| |||| ||||| ||| || || || | || ||||| ||||| || || ||| Sbjct 186749 ACATTTTCAATAGTGTCGGACGGCTCGACCTCAAGAGTGATGGTCTTACCCGTTAGGGTT 186690 Query 15160 TTTACAAAAATTTGCAT 15176 || |||||||| ||||| Sbjct 186689 TTGACAAAAATCTGCAT 186673 >seq1304 Length=336898 Score = 105 bits (116), Expect = 5e-18 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTT 15025 || ||||| | || || || ||||| |||||||| ||| || || || | |||| Sbjct 274191 ACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCG--GACAAGGTGCGACCATCTT 274248 Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085 | |||||||| |||||| | |||||||| ||||| || || || ||||| ||||| Sbjct 274249 CCAATTGTTTACCAGCGAAGATCAAACGTTGTTGATCTGGGGGGATACCTTCTTTGTCTT 274308 Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 |||||| || ||| |||| || || ||| | || || || ||||||||||| | Sbjct 274309 GGATTTTGGCCTTGACATTTTCAATGGTGTCGGAAGGCTCAACTTCCAAGGTAATGGTCT 274368 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 |||| || | |||||| || || || ||||| Sbjct 274369 TACCAGTTAAAGTTTTGACGAAGATCTGCAT 274399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357384538660205