Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_012635.1 Length=168394 Score E Sequences producing significant alignments: (Bits) Value seq253 131 2e-25 seq1596 100 3e-16 >seq253 Length=360942 Score = 131 bits (144), Expect = 2e-25 Identities = 464/712 (65%), Gaps = 31/712 (4%) Strand=Plus/Plus Query 43730 GCGATACGAGGAAGATTCAGTGTTACAACACCGAGATTATTACGTCCATCAAGAATTTCA 43789 || ||||| || || || || | | ||||| | ||||||||| |||||| |||||| Sbjct 104859 GCAATACGCGGCAGGTTAAGGCTAATGACACCTAAATTATTACGGCCATCATGAATTTGT 104918 Query 43790 TTGCCAGTCGAATCTTTCCATACGCTCAAGAAACTACGACAACCCATTGGAG----AAAC 43845 | |||| | |||| | || | ||||| || || || |||||||| | |||| Sbjct 104919 TGGCCATTT---TCTTCGTAGACACCTAAGAAGCTGCGGCAGCCCATTGGCGTTTTAAAC 104975 Query 43846 AGGAACAGATGAACCAGTGATAGCTTTATTGTTCTTAGCTGAAATAATATCAGGATACAT 43905 || | | | || || | |||| | | ||| | || || || |||||||| Sbjct 104976 --GAGCCCGTTA--CATCGACAACTTTGT----CATAGTTTAAG--ATGTCGGGATACAT 105025 Query 43906 CCTTTTGCTTGCACACTCTAAAGCAAGCTGCTTAATATCATAGTTCGGATCGTCTTTATA 43965 | |||||| ||||||||||| || | ||| || ||||||||||| ||||| | | | Sbjct 105026 GCGTTTGCTCGCACACTCTAATGCTAACTGTTTGATATCATAGTTAGGATCACCATATTG 105085 Query 43966 AAGATTAACACCTTCTTCAA---CAAACATAACAAGCTTAGGGAAAATAGGAGTTATCCC 44022 |||||| |||| || || |||||| | | |||||||||| | |||| | | Sbjct 105086 GTGATTAAGGCCTTTTTTAATAGCAAACA---CTAATTTAGGGAAAACGGCAGTTTTACG 105142 Query 44023 ATCACGACCAAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGAATCATTCGTTCAGT 44082 || ||| | || ||||| ||||| ||||| | || || |||| ||| | | Sbjct 105143 ATTTTTACCTAACCCAGCGATACGGTTTTTTAGAATGGATTGTTGGATCAAGCGTGCT-T 105201 Query 44083 CCAGTCA-GTTCCTGTACCAAATGTAATTGTTACAAAAGGTGTTTGTCCGTTTGAACTAA 44141 | | | || ||| |||||| || ||||| || || ||||| || || | || Sbjct 105202 CTTGCGATGTGCCTAAACCAAACCCAAAGGTTACGAAGGGGGTTTGACCATTGGCGGTAT 105261 Query 44142 AGAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTATACAT-CTTTTTCTGTT 44200 || || || ||||| |||||| | |||||| |||||||| |||| ||||||| ||| Sbjct 105262 GCAGTGTGTTCACTTCGTATTCAAGGGATTGGAAGGCATCGTA-ACATTCTTTTTCGGTT 105320 Query 44201 TTAGATTGAGCATAATTTAACGCATCAGCGATTTGCCATTTTTCTGCATCCTCAATATGT 44260 | | |||||| | |||||| | || ||| || || | | |||| Sbjct 105321 TGGCTATCAGCATAGCCTTTCGCATCTTCAATGCCCCAATTGATCGCTGTTTTTAGATGT 105380 Query 44261 TTTGCATAGGTGCGTTTAACATAAGGAGAAAGTACTTTATCTA--CATTAGCAAAAGTCG 44318 ||| ||||| || | |||||||||| ||| | || ||| | | | | | || | Sbjct 105381 TTTTCATAGCTGATGTGGACATAAGGAGCAAGGATTTCATCAATGCGGTTG--ATGGTGG 105438 Query 44319 TTCCGCCGTATTGATGGGAAGCAACCTGTGCAGTAATTTGTGCCATAATTGCAGTAGCAA 44378 | || || || |||| ||| || || || ||||||| || | | ||| || ||| Sbjct 105439 TGCCACCATAAATATGGCTAGCTACTTGAGCGATAATTTGGGCTGTCACTGCGGTGGCAG 105498 Query 44379 CACCGATTGATTTAGGAGTTTCAATCTGTGCATTACCAAGCTTAAATCCGTT 44430 ||||||||||||| || || | |||||||| | ||||| || || Sbjct 105499 TGGAAATTGATTTAGGAGGCTCTATTTCGGCATTACCCATTTTAAACCCATT 105550 >seq1596 Length=248270 Score = 100 bits (110), Expect = 3e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 63154 GTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 63213 || || ||||||| |||||||| |||||||||| ||||||||||||||| || || Sbjct 48922 GTGAAAGTACGAGTAATAACGTCTTGCTGCTGTTCTTTAGTCAGAGAGTTAAAACGCACC 48863 Query 63214 GCATAACCGGATACACGGATGGTCAGCTGCGGATA 63248 |||||||| ||||||||||| ||||| || ||||| Sbjct 48862 GCATAACCCGATACACGGATAGTCAGTTGTGGATA 48828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 538721264383920