Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_012638.1 Length=165429 Score E Sequences producing significant alignments: (Bits) Value seq253 116 4e-21 seq1596 100 3e-16 seq613 87.8 2e-12 >seq253 Length=360942 Score = 116 bits (128), Expect = 4e-21 Identities = 458/708 (65%), Gaps = 23/708 (3%) Strand=Plus/Plus Query 40948 GCGATACGAGGAAGATTCAGTGTTACAACACCGAGATTATTACGTCCATCAAGAATTTCA 41007 || ||||| || || || || | | ||||| | ||||||||| |||||| |||||| Sbjct 104859 GCAATACGCGGCAGGTTAAGGCTAATGACACCTAAATTATTACGGCCATCATGAATTTGT 104918 Query 41008 TTGCCAGTCGAATCTTTCCATACGCTCAAGAAACTACGACAACCCATTGGAGAAACAGGA 41067 | |||| | |||| | || | ||||| || || || |||||||| | Sbjct 104919 TGGCCATTT---TCTTCGTAGACACCTAAGAAGCTGCGGCAGCCCATTGGCGTTT----- 104970 Query 41068 ATAGATGAGCCGGTGATAGCTTTA--TTGTTCTTAGCTGAAATAATATCAGGATACATCC 41125 || | ||||| || | | | | || || ||| | || || || |||||||| | Sbjct 104971 -TAAACGAGCCCGTTACATCGACAACTTTGTCATAGTTTAAG--ATGTCGGGATACATGC 105027 Query 41126 TTTTGCTTGCGCACTCTAGAGCAAGCTGTTTAATATCATAGTTCGGATCGTCTTTATAAA 41185 |||||| || ||||||| || | |||||| ||||||||||| ||||| | | | Sbjct 105028 GTTTGCTCGCACACTCTAATGCTAACTGTTTGATATCATAGTTAGGATCACCATATTGGT 105087 Query 41186 GATTAACACCTTCTTCAACGAACATA-ACAAGCTTAGGGAAAATAGGAGTTATCCCATCA 41244 |||||| |||| || || | || | || | |||||||||| | |||| | | || Sbjct 105088 GATTAAGGCCTTTTTTAA-TAGCAAACACTAATTTAGGGAAAACGGCAGTTTTACGATTT 105146 Query 41245 CGACCAAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGAATCATTCGTTCAGTCCAG 41304 ||| | || ||||| ||||| ||||| | || || |||| ||| | || | Sbjct 105147 TTACCTAACCCAGCGATACGGTTTTTTAGAATGGATTGTTGGATCAAGCGTGC-TTCTTG 105205 Query 41305 TCA-GTTCCCGTACCAAATGTAATTGTTACAAAAGGCGTTTGTCCGTTTGAACTAAAGAG 41363 | || || |||||| || ||||| || || ||||| || || | || || Sbjct 105206 CGATGTGCCTAAACCAAACCCAAAGGTTACGAAGGGGGTTTGACCATTGGCGGTATGCAG 105265 Query 41364 AGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTATACA-TCTTTTTCTGTTTTAG 41422 || || ||||| |||||| | |||||| |||||||| ||| |||||||| |||| Sbjct 105266 TGTGTTCACTTCGTATTCAAGGGATTGGAAGGCATCGTA-ACATTCTTTTTCGGTTTGGC 105324 Query 41423 ATTGAGCATAATTCAACGCATCAGCGATTTGCCATTTTTCTGCATCCTCAATATGTTTTG 41482 | |||||| |||||| | || ||| || || | | ||||||| Sbjct 105325 TATCAGCATAGCCTTTCGCATCTTCAATGCCCCAATTGATCGCTGTTTTTAGATGTTTTT 105384 Query 41483 CATAGGTGCGTTTAACATAAGGAGAAAGTACTTTATC--TACATTAGCAAAAGTCGTTCC 41540 ||||| || | |||||||||| ||| | || ||| | | | | | || || || Sbjct 105385 CATAGCTGATGTGGACATAAGGAGCAAGGATTTCATCAATGCGGTTG--ATGGTGGTGCC 105442 Query 41541 GCCGTATTGATGGGAAGCAACCTGTGCAGTAATTTGTGCCATAATTGCAGTAGCAACACC 41600 || || |||| ||| || || || ||||||| || | | ||| || ||| Sbjct 105443 ACCATAAATATGGCTAGCTACTTGAGCGATAATTTGGGCTGTCACTGCGGTGGCAGTGGA 105502 Query 41601 GATTGATTTAGGAGTTTCAATCTGTGCATTACCAAGCTTAAATCCGTT 41648 ||||||||||||| || || | |||||||| | ||||| || || Sbjct 105503 AATTGATTTAGGAGGCTCTATTTCGGCATTACCCATTTTAAACCCATT 105550 >seq1596 Length=248270 Score = 100 bits (110), Expect = 3e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 60974 GTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 61033 || || ||||||| |||||||| |||||||||| ||||||||||||||| || || Sbjct 48922 GTGAAAGTACGAGTAATAACGTCTTGCTGCTGTTCTTTAGTCAGAGAGTTAAAACGCACC 48863 Query 61034 GCATAACCGGATACACGGATGGTCAGCTGCGGATA 61068 |||||||| ||||||||||| ||||| || ||||| Sbjct 48862 GCATAACCCGATACACGGATAGTCAGTTGTGGATA 48828 >seq613 Length=31296 Score = 87.8 bits (96), Expect = 2e-12 Identities = 90/113 (80%), Gaps = 6/113 (5%) Strand=Plus/Minus Query 68643 GCGCTCTACCAAACTGAGCTACACGGAGTAAATTAAATTGGAGCGGATAATGAGAATCGA 68702 |||||||||||| |||||||| | || | || ||||||||| | | ||||||| Sbjct 4255 GCGCTCTACCAA-CTGAGCTATATC-AGCACATC---TTGGAGCGGGCAGCGGGAATCGA 4201 Query 68703 ACTCACATCATCAGATTGGAAGTCTGAGGTAAT-GCCATTATACGATATCCGC 68754 || | ||||||||| ||||||| |||||||||| ||||||||||||| |||| Sbjct 4200 ACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGCCATTATACGATGCCCGC 4148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 529233467545720