Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_012696.1 Length=73325 Score E Sequences producing significant alignments: (Bits) Value seq410 86.0 3e-12 >seq410 Length=72445 Score = 86.0 bits (94), Expect = 3e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 30634 ATCAAAGAATGCTTTGAAGCTCCTCCCGGATGGCTCTTTGTAGGTCTAGACTTTGACTCA 30693 |||||| |||||| ||| || || ||||| ||| || ||||||||||| Sbjct 61897 ATCAAACGTTGCTTTAGAGCACCGAAAGGCTGGCTGTTTACTGGACTAGACTTTGATAGT 61838 Query 30694 CTTGAAGACAGAATCTCTGCACTCCAGACAAAAGATCCCGAAAAACTGAAGGTTTATACC 30753 |||||||||||||| || || | || ||||| || | ||||| ||||| ||||| Sbjct 61837 CTTGAAGACAGAATATCCGCTTTAACCACTAAAGACCCTAATAAACTTAAGGTGTATACA 61778 Query 30754 GATGGTTACGATGGTCACTCTCTACGGGCCTATGGTTACTTTGGTGATCAGATGCCAGAT 30813 |||||||| ||||| |||| | | || || | |||||| || | ||||||||| Sbjct 61777 GATGGTTATGATGGACACTGTTTGCGTGCTTTCTATTACTTCAAAGACCGTATGCCAGAT 61718 Query 30814 AT 30815 || Sbjct 61717 AT 61716 Score = 84.2 bits (92), Expect = 1e-11 Identities = 170/250 (68%), Gaps = 2/250 (1%) Strand=Plus/Minus Query 29702 TAGACCAAGAAGGTCTCTTGGAAGGTTTGGACGTGATGCTTGAAAACTGGGAATGCACCC 29761 |||||||| |||| | ||||||||||| ||| ||| || ||||| || Sbjct 62790 TAGACCAACGAGGTTTGTTGGAAGGTTTAGACACTATGTGCCGCAATTGGGATGATACTA 62731 Query 29762 AGTTGATCACCTATCTGGCTACCAATAGCTGTGCTGGCAATGAGCTAGGTCTCAAAGCTC 29821 | | ||||| ||| | || ||||| | |||| | || | ||||| | |||||| Sbjct 62730 AAATCATCACATATTTAGCGACCAACAACTGTTCACAAAACCATTTAGGTTTAAAAGCTA 62671 Query 29822 AAGCACAAGAGTTTGCTGGGAACTATGCTGTCGAGGATATCCAAGACATCACTCAGAT-C 29880 | |||| |||||||| || ||||||||||| || |||||| | || |||| || || | Sbjct 62670 ACTCACACGAGTTTGCAGGTAACTATGCTGTAGAAGATATCAATGATATCAATCTAATAC 62611 Query 29881 GAACTAGCAAAGCTCTTGGAATACAACCTCGTAGATGGTCTTTCCACTTGGTATGTCTAC 29940 ||| | || | |||||||| ||| || |||| | |||||| ||||| || Sbjct 62610 CTCCTA-AAGAGTTATTGGAATATAACGTCAAAGATTCCTTATCCACTAACTATGTTTAT 62552 Query 29941 AACAAGCATT 29950 ||||| ||| Sbjct 62551 GACAAGTATT 62542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 234510303982198