Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1348 118 1e-21 seq1531 109 7e-19 >seq1348 Length=1847788 Score = 118 bits (130), Expect = 1e-21 Identities = 370/570 (65%), Gaps = 11/570 (2%) Strand=Plus/Plus Query 116236 AAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTA 116295 ||||| || ||| || | ||| || ||||| | ||||| || ||||| | || ||| Sbjct 1698879 AAAATCAAAGTATCGGCAAAACCCTGAACACCTATACCAATAGGACGATGACGCAAATTG 1698938 Query 116296 GACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTG 116355 ||||||| ||| || |||||||| || | ||||| | | || ||||| ||| Sbjct 1698939 GACTTTCTAGCTTCGGGCAACGGATAAAAGTTGATGTCGATGATTTTGTTGAGATTCTTG 1698998 Query 116356 GTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCAT-- 116413 || | ||| ||||| | | | | |||| | ||||||| |||| ||| Sbjct 1698999 GTAATAACTTTTGTAACATTTTTCAATTTTTTGAAATCAAAG------GTCTTTTCTGGC 1699052 Query 116414 -TGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCA 116472 ||||| || || |||||| || || |||| |||||| |||| ||||||| || Sbjct 1699053 GTGACAAACATATTAAGGGCAATGGAGGCCAAATTACAAACAGCTATCTCATCAGGGGCA 1699112 Query 116473 GTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 116532 | || |||| ||| || || || || || | |||||||||||| | ||| | || Sbjct 1699113 GAATATTCTACAATCTCTGTGCATAAGTTGCTGCACTTAATGGTGCCAATGTTTTGCTG- 1699171 Query 116533 TTTGACTTTG-TGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTG 116591 ||| |||| ||| || ||||| ||||| | |||||| || || || || || ||| Sbjct 1699172 GTTGCTTTTGCGGTTGCAAGCATCTTTGTACAACATATAGGGTGTACCGGTTTCAACTTG 1699231 Query 116592 GGACTTGAGAATAGCCTTCCATACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTC 116651 | | | ||||| ||| | | | ||| || ||| |||||| || || Sbjct 1699232 AGCTTCAATTATAGCAAACCAAAGAGCCTGAGCTTTGACGGTGCGATTGGCTTTTCCTTC 1699291 Query 116652 CTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGG 116711 | || ||||| || || | | || ||||| |||||| | | || || || || Sbjct 1699292 TTTTTCATACTTGGTATACAATTCTTCGAACTCCTCACCCCAAACATCCTGCAGACCGGG 1699351 Query 116712 TGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAG 116771 || | |||||| | || ||||| | |||| || || || || ||||| || | Sbjct 1699352 ACATTTGTGTGGACACATTAGGGACCAGTCACCATTTTCTTCCACACGTTTCATAAACAA 1699411 Query 116772 GTCTGGGATCCAGAGCGCCGAGAAGAGATC 116801 ||| || ||||| || || |||| ||||| Sbjct 1699412 GTCGGGTATCCACAGAGCATAGAAAAGATC 1699441 >seq1531 Length=926236 Score = 109 bits (120), Expect = 7e-19 Identities = 228/334 (68%), Gaps = 12/334 (4%) Strand=Plus/Minus Query 175746 AACCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGA 175805 |||| ||||||||||| |||| || || || | |||||| || | |||||||| Sbjct 339158 AACCGGTGCCAATACCATCGGCACCATTAACCAAAACCATGGGTATAACCGGCATATACC 339099 Query 175806 AGTCTGGTTCAATCGCACGCCCATCATCGTCCAAATAGTTGAGCACGGGGTCATCCCTCG 175865 | | |||||||||| | |||||||| || ||| | || | || ||||| | Sbjct 339098 ATTGTGGTTCAATCCTTTGACCATCATCAACCTCATACTGCAGTAAAGGATCATCATGGG 339039 Query 175866 GATCAAAGATTTTACGAGCATCCTTGGTGAG----TTTTGTGAAGATGTACCTCGTT-TG 175920 ||| ||| || ||| || | | ||| | | ||||| || || | | || Sbjct 339038 GATGAAAAATAAGACGTGC----TAGAGGAGACATTATAGTGAAAATATAACGAGCGCTG 338983 Query 175921 AGACGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATT 175980 || ||||||||| ||| | | ||| || || |||||||| | ||||| |||||||| Sbjct 338982 GCACA-ATCTTTGCCGCCCGTTAAACGTGTACCGAATTGACCTCTAGGCTCTAGGAGATT 338924 Query 175981 GATATTGTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGT-ATCCGCGAGGGAGA 176039 ||||| || ||||||| ||||| | ||||| || ||||| || || | | | | | Sbjct 338923 AATATTATTCGAGCCCACATAGTTTTGGGCCAAATTAACAATGGTCATTTGTAATGAA-A 338865 Query 176040 CTTCACCGTGATGGTAGGCCGACTTGTCCGCCAC 176073 | |||||||||||||| || ||| | || ||||| Sbjct 338864 CCTCACCGTGATGGTAAGCGGACATTTCAGCCAC 338831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613494063277080