Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq964 123 6e-23 seq1190 105 2e-17 >seq964 Length=291957 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||||| || ||||||||||||| ||||||||||| ||| || Sbjct 217103 CGAAGACGTAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAGGTA 217044 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||||||||| || || ||||||||||| | ||| ||||| || || ||| ||| Sbjct 217043 CGACCATCTTCCAGTTGTTTACCGGCGAAGATCAAACGTTGCTGATCTGGGGGAATACCT 216984 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| || || ||| ||| || | ||| || | | ||| || ||||| Sbjct 216983 TCCTTATCCTGGATTTTAGCCTTTACGTTCTCAATGGTATCGGAAGGTTCGACTTCCAAA 216924 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || | ||||| || || ||||| Sbjct 216923 GTGATGGTTTTGCCGGTCAAGGTTTTAACGAAGATTTG 216886 Score = 104 bits (114), Expect = 6e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 |||||||| || ||||| |||| |||||| || | | || | ||||||||||| || Sbjct 216857 TGGAGAGTAGATTCCTTCTGGATGTTGTAATCCGAAAGGGTGCGTCCATCTTCCAATTGT 216798 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || ||||| ||||| | ||| || ||||| || ||| ||||| || || ||||| Sbjct 216797 TTACCGGCAAAGATCAAACGTTGTTGGTCTGGGGGAATACCTTCCTTATCTTGGATCTTA 216738 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||| ||| ||| | ||| || | | ||| || ||||| ||||| || || || || Sbjct 216737 GCCTTGACGTTTTCAATGGTATCGGAAGGTTCAACTTCCAAAGTGATGGTTTTTCCGGTC 216678 Query 199607 AGAGTTTTCACAAAAATTTG 199626 | ||||||||| || || || Sbjct 216677 AAAGTTTTCACGAAGATCTG 216658 >seq1190 Length=275307 Score = 105 bits (116), Expect = 2e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||| | ||| || || ||||| | ||||| |||| | ||| Sbjct 186893 CGAAGGCGCAATACCAAGTGCAAAGTGGATTCTTTTTGAATATTGTAATCAGAGAGAGTA 186834 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||| || ||||| ||||| || | ||| || || || || ||||||| Sbjct 186833 CGGCCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATTCCT 186774 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| ||||||||||| || || ||| | ||||| | | || || || | Sbjct 186773 TCTTTGTCCTGAATCTTGGCTTTGACATTTTCAATAGTGTCGGACGGCTCGACCTCAAGA 186714 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||||||||| || ||||| |||||||| || Sbjct 186713 GTGATGGTCTTACCCGTTAGGGTTTTGACAAAAATCTG 186676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178895725249771