Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq964 111 2e-19 >seq964 Length=291957 Score = 111 bits (122), Expect = 2e-19 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 46358 TATTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTG 46417 || ||| |||||| | | ||| | ||||| ||| | || |||||||||||| ||| Sbjct 217118 TAATATGCGCCTCCACGAAGACGTAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTG 217059 Query 46418 TAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGG 46477 ||||| || | || || | || || || || || |||||||| ||||| || ||||| Sbjct 217058 TAGTCAGACAAGGTACGACCATCTTCCAGTTGTTTACCGGCGAAGATCAAACGTTGCTGA 216999 Query 46478 TCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTC 46537 || | || | | ||||| ||| ||| || ||| | || | | || ||| Sbjct 216998 TCTGGGGGAATACCTTCCTTATCCTGGATTTTAGCCTTTACGTTCTCAATGGTATCGGAA 216939 Query 46538 GATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | ||| || |||| |||||||||||||| |||| |||||||| ||||||||||| Sbjct 216938 GGTTCGACTTCCAAAGTGATGGTTTTGCCGGTCAAGGTTTTAACGAAGATTTGCAT 216883 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 |||||| || | ||| | ||| ||||| ||||| ||||| || || || ||||| | Sbjct 216870 ACGCAATACTAAATGGAGAGTAGATTCCTTCTGGATGTTGTAATCCGAAAGGGTGCGTCC 216811 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || | || || ||||| || ||||| || || ||||| | || | | ||||| Sbjct 216810 ATCTTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGGTCTGGGGGAATACCTTCCTT 216751 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 || |||||| ||||| | | | || ||| | ||| || |||| ||||| Sbjct 216750 ATCTTGGATCTTAGCCTTGACGTTTTCAATGGTATCGGAAGGTTCAACTTCCAAAGTGAT 216691 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||| || |||| ||||| || ||||| ||||| Sbjct 216690 GGTTTTTCCGGTCAAAGTTTTCACGAAGATCTGCAT 216655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565226296832760