Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq964 150 1e-31 seq1304 125 5e-24 seq1190 100 2e-16 >seq964 Length=291957 Score = 150 bits (166), Expect = 1e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || |||||||||| |||||| || | || ||||||||| || |||||||||| Sbjct 215866 CCACCACGCAAACGCAATACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAATCGGAT 215807 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| ||| |||| ||||| ||||| || | ||||| |||||||| ||||| | ||| Sbjct 215806 AAAGTGCGGCCATCTTCCAACTGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGGGGA 215747 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||||||||| ||||| ||||| | ||| || || | ||| || Sbjct 215746 ATACCTTCTTTGTCTTGGATTTTAGCTTTAACATTTTCTATAGTATCCGAAGGTTCAACC 215687 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 ||||| |||||||||||||||||||| ||||| ||||| || |||||| Sbjct 215686 TCCAATGTAATTGTTTTACCCGTTAATGTTTTAACGAAAATTTGCATG 215639 Score = 129 bits (142), Expect = 4e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || |||||||| | |||||||||||| || ||||||||||||||||||||| | Sbjct 215639 GCCACCACGCAAACGTAATACCAAATGCAATGTAGATTCTTTTTGTATATTATAATCAGA 215580 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| ||| | || ||||||||||| || ||||||| ||||| || ||||| | || Sbjct 215579 CAATGTGCGCCCGTCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGG 215520 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | ||||||||||| ||||| ||||| | | | || || | || || Sbjct 215519 GATTCCTTCTTTGTCTTGAATTTTAGCTTTAACATTTTCAATAGTATCAGAAGGCTCAAC 215460 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 |||||||| || ||||| || || || || || || ||||| |||||| Sbjct 215459 TTCCAAAGTGATGGTTTTGCCAGTCAATGTCTTAACAAAGATTTGCATG 215411 Score = 118 bits (130), Expect = 7e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || |||||||| || ||||| || | ||| ||||||||| ||||||||||||| Sbjct 215411 GCCACCACGCAAACGTAGAACCAAGTGGAGAGTAGATTCTTTTTGAATATTATAATCGGA 215352 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 |||| |||| | || ||||||||||| ||| ||||||||| ||| || ||||| | ||| Sbjct 215351 CAAAGTGCGTCCGTCTTCCAATTGTTTACCGGCAAAAATTAGACGTTGTTGATCTGGGGG 215292 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | || || || || ||||| |||| | | | || || | ||| || Sbjct 215291 AATACCCTCCTTATCTTGAATTTTAGCCTTAACATTTTCAATCGTATCCGAAGGTTCGAC 215232 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | || || || || || |||||||| || |||||||| ||||| Sbjct 215231 CTCAAGGGTGATGGTCTTGCCAGTTAAAGTCTTCACGAAGATTTGCAT 215184 >seq1304 Length=336898 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| ||||||||||| |||||| ||| ||||| || || || |||| | Sbjct 274173 CCACCACGAAGACGGAGTACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCGGAC 274232 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| |||| ||||||||||| || | || || ||||| || ||||| | ||| Sbjct 274233 AAGGTGCGACCATCTTCCAATTGTTTACCAGCGAAGATCAAACGTTGTTGATCTGGGGGG 274292 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||||||||| ||||| || | | | | ||||| | || || Sbjct 274293 ATACCTTCTTTGTCTTGGATTTTGGCCTTGACATTTTCAATGGTGTCGGAAGGCTCAACT 274352 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| ||||| || ||||| ||||||||||| |||||||||||||| Sbjct 274353 TCCAAGGTAATGGTCTTACCAGTTAAAGTTTTGACGAAGATCTGCAT 274399 >seq1190 Length=275307 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 |||| |||||| ||||||||| ||||||||| ||||| ||||| | | | || || Sbjct 186887 CGCAATACCAAGTGCAAAGTGGATTCTTTTTGAATATTGTAATCAGAGAGAGTACGGCCA 186828 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || ||||||||||| || | ||||| ||||| || ||||| | || | ||||||||| Sbjct 186827 TCTTCCAATTGTTTTCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATTCCTTCTTTG 186768 Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATT 39684 || || || ||| | | | | ||||| | || || || | ||| || Sbjct 186767 TCCTGAATCTTGGCTTTGACATTTTCAATAGTGTCGGACGGCTCGACCTCAAGAGTGATG 186708 Query 39685 GTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || |||||||||| ||||| || || |||||||| Sbjct 186707 GTCTTACCCGTTAGGGTTTTGACAAAAATCTGCAT 186673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347362347899729