Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq869 239 5e-58 seq1304 114 1e-20 seq964 114 1e-20 >seq869 Length=1271022 Score = 239 bits (264), Expect = 5e-58 Identities = 476/703 (68%), Gaps = 4/703 (1%) Strand=Plus/Minus Query 132730 TCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGCACC 132789 |||||||| || || || |||| |||||| || ||||| | || | || | || Sbjct 484138 TCGGCCACAAATTCTATATATTCCGACATTAATTTACAATTCATGCCTATCAAATTGACG 484079 Query 132790 GGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTA 132849 |||| || || || || || || || || ||||| || |||| ||||| || Sbjct 484078 GGCAAAGCATCTGTAAGGAATTCCTGTTCAATTTTCACCGCTTCAGTGATAATTTCAATA 484019 Query 132850 ACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAA 132909 | | | | || || ||||| |||||||| || ||||| || |||||| || ||| Sbjct 484018 ATTCTCTCTCGACTGGGACGTTGTACCAAATGTTTAAACATTAATACAGCAAAATCACAA 483959 Query 132910 TGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCG 132969 || || ||||| || | || || | || ||| ||| || | || ||||| || || Sbjct 483958 TGTAAACCCTCATCACGTGATATCAACTCATTGGAGAATGTAAGACCAGGCATAAGACCA 483899 Query 132970 CGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCC 133029 ||||| || |||||||| |||| || |||||||| |||||| | ||||| || || Sbjct 483898 CGTTTCTTTAGCCAAAAGATGGAAGCAAAACTGCCACTAAAGAAAATACCCTCTACAGCA 483839 Query 133030 GCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCC 133089 || ||||| | | || || || || | ||| ||| | ||||| || ||| Sbjct 483838 GCAAAAGCAATAATACGTTCACCAAAATTTGCTGATTTCGAAGAAATCCAAGCCATTGCC 483779 Query 133090 CATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTC 133149 || |||||||| || || ||||| ||||| || || || || | | | Sbjct 483778 CAATCGGCCTTACGCTTAACAGCTGGCATAGTTTCAATAGCATTAAAGAGATAATCACGC 483719 Query 133150 TCTTCCGAGGAACGC--ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGT 133207 | ||| | || | | || | || || || | ||||||||| |||||||| | Sbjct 483718 TGTTC--ACGATCCTTAATATAACTATCAATTAGAATACTATACATTTCAGAGTGTACAT 483661 Query 133208 TCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAG 133267 | |||||||| ||||||||||| || || || || ||||| || || |||||||||| Sbjct 483660 TTTCCATGGCAATTTGAAAGCCATAGAAACAGCGTGCCTCTGTAACTTGTACTTCTTGAG 483601 Query 133268 CGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCA 133327 |||||| ||||| |||||||| ||||| ||||| ||| |||||||| || || || | Sbjct 483600 AGAAACGTTCGACAAGATTTTCATTGACAATGCCATCGGAAGCGGCGAAGAAAGCAAGAA 483541 Query 133328 CGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGG 133387 | || |||||||| ||||| |||||| | | | ||||||||| | || || | Sbjct 483540 CATGTGAAATGAAATGACGCTCATTGTCGGTGAGTCTTTCCCAGTCGGAGTTATCTTTAG 483481 Query 133388 ACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTT 133430 | || || || || || || |||||||| || || ||||| || Sbjct 483480 AAAGATCTACTTCTTCTACCGTCCAAAAAGAAGCTTCGGCCTT 483438 >seq1304 Length=336898 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| | || || || ||||| ||| | || || ||| | || Sbjct 274399 ATGCAGATCTTCGTCAAAACTTTAACTGGTAAGACCATTACCTTGGAAGTTGAGCCTTCC 274340 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | || | ||||||| |||||||| || || ||| | || ||| Sbjct 274339 GACACCATTGAAAATGTCAAGGCCAAAATCCAAGACAAAGAAGGTATCCCCCCAGATCAA 274280 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | || | ||| || ||||| |||| || | |||||| | |||||||||| Sbjct 274279 CAACGTTTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGCACCTTGTCCGACTACAAC 274220 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| | || | |||||||| || ||| Sbjct 274219 ATCCAAAAGGAATCCACTTTACATTTGGTACTCCGT 274184 >seq964 Length=291957 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| | || |||||||||||||| | || ||||| | || Sbjct 216883 ATGCAAATCTTCGTTAAAACCTTGACCGGCAAAACCATCACTTTGGAAGTCGAACCTTCC 216942 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || | ||||||| || || || || |||||| | || || Sbjct 216943 GATACCATTGAGAACG-TAAAGGCTAAAATCCAGGATAAGGAAGGTATTCCCCCAGATCA 217001 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || | || | ||| || ||||| ||||| || | || ||| | |||||||| Sbjct 217002 GCAACGTTTGATCTTCGCCGGTAAACAACTGGAAGATGGTCGTACCTTGTCTGACTACAA 217061 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| | || || ||||||||||| ||| Sbjct 217062 CATCCAAAAGGAGTCCACCCTCCATTTGGTGCTACGT 217098 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || | || |||||||||||||| | || || ||| | | Sbjct 215412 ATGCAAATCTTTGTTAAGACATTGACTGGCAAAACCATCACTTTGGAAGTTGAGCCTTCT 215471 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | ||| |||||| ||||| | |||||||| ||||| || | || ||| Sbjct 215472 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGACAAAGAAGGAATCCCACCAGATCAA 215531 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | |||| || |||||||| |||| |||| |||||| | || || || Sbjct 215532 CAACGTTTGATTTTTGCTGGCAAACAATTGGAAGACGGGCGCACATTGTCTGATTATAAT 215591 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 || ||||| ||| | || |||||||||| | |||||| | || ||| Sbjct 215592 ATACAAAAAGAATCTACATTGCATTTGGTATTACGTTTGCGTGGTGGC 215639 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| | || || ||||||||||| | || || || | || Sbjct 216655 ATGCAGATCTTCGTGAAAACTTTGACCGGAAAAACCATCACTTTGGAAGTTGAACCTTCC 216714 Query 38304 GACAGC-GTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | || ||||| | || | || |||| || || || || |||||| | ||||| Sbjct 216715 GATACCATTGAAAACG-TCAAGGCTAAGATCCAAGATAAGGAAGGTATTCCCCCAGACCA 216773 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | || || ||||| |||| || | |||||||| || ||||| Sbjct 216774 ACAACGTTTGATCTTTGCCGGTAAACAATTGGAAGATGGACGCACCCTTTCGGATTACAA 216833 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| |||||| | || || ||||| || ||||| Sbjct 216834 CATCCAGAAGGAATCTACTCTCCATTTAGTATTGCGT 216870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500162090049920