Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_014036.1 Length=174436 Score E Sequences producing significant alignments: (Bits) Value seq253 116 4e-21 >seq253 Length=360942 Score = 116 bits (128), Expect = 4e-21 Identities = 778/1226 (63%), Gaps = 52/1226 (4%) Strand=Plus/Minus Query 152919 GCCCGTGCATATATCGAATATCGTCATGATCGTGATATCGCCCGTGAACAAAACGGAA-- 152976 || ||||||||||||||||| || ||||| || |||| | || ||| ||||| | Sbjct 105874 GCTCGTGCATATATCGAATACCGCCATGACCGAGATAATGAACGCGAA--AAACGTAGCC 105817 Query 152977 AATTATTCCGTGATATCAAGGGTTTGATGACTCTTAGTAACAAAGAATTAACCAACGAAA 153036 || | || |||||| ||| |||| | || || |||| ||| |||| Sbjct 105816 AACTGACCCATGATATTCGCGGTCTGATTGAACAAAGCAATGTTTCATTACTCAATGAAA 105757 Query 153037 ACGCAAACAAAGATTCTCGCGTATTCCCGACTAAACGCGATCTTCTGGCTGGTATCGTTT 153096 | ||||||||||| || |||| || |||| ||| | || || || || || Sbjct 105756 ATGCAAACAAAGACAGCAAAGTGATCCCTACCCAACGTGATTTGCTCGCAGGCATTGTCG 105697 Query 153097 CTAAACATATGGCGCGTAAC--CATATTCTACCGAAACATATTGTTGCGGCGCATGATTC 153154 | || ||| ||| ||| |||||| | || || | ||| || || || Sbjct 105696 CAAAGCATTA--CGCTAAACAACATATTTTGCCACGTGATGTGGTTATTGCTCACGAACG 105639 Query 153155 CGGTGATATTCATTATCACGATCTGGATTACA-GCCCTTTCACCCCATACACTAACTGCT 153213 |||||| ||||||||||||||||| ||||| ||| ||| |||||| |||||| Sbjct 105638 CGGTGAAATTCATTATCACGATCTCGATTATGCGCCATTTTTCCCCATGTT-TAACTGTA 105580 Query 153214 GTCTTGTTGACCTGAAAGGCATGTTAGAAAACGGGTTCCGTATGGGTAACGCTGATATCG 153273 || |||| || ||||||||||| || ||||| |||||||| || || || | Sbjct 105579 TGCTGATTGATCTTGAAGGCATGTTAACTAATGGGTTTAAAATGGGTAATGCCGAAATAG 105520 Query 153274 AACCGCCTAAATCAATCGGTGTTGCTACTGCTCTTATGGCTCAGATCACCGCACAGATTG 153333 | || ||||||||||| ||| || || | | || || || | ||| || | | Sbjct 105519 AGCCTCCTAAATCAATTTCCACTGCCACCGCAGTGACAGCCCAAATTATCGCTCAAGTAG 105460 Query 153334 CTTCTCACCAGTACGGCGGGACAACCTTTGCAAATG--TCGATCAGGTGCTGGCCCCTTA 153391 || || || || || || ||| | ||| | | ||| | | || || ||||| Sbjct 105459 CTAGCCATATTTATGGTGGCACCACCAT--CAACCGCATTGATGAAATCCTTGCTCCTTA 105402 Query 153392 CGTTGAAATGACGTACAACAAACACTTTAAAGATGCTGTTTGGTACGGGGTTCCTAAAT- 153450 || | || | || | ||||| | |||| | | | | ||| | | || Sbjct 105401 TGTCCACATCAGCTATGAAAAACA-TCTAAAAACAGCGATCAATTGGGGCATTGAAGATG 105343 Query 153451 CAAAACAGTATGC-GATGGAAAAAACAGAAAAGGATGTATTCGATGCGTTCCAGTCATAC 153509 | ||| ||||| ||| | ||| | ||||| |||| | |||||| ||||| || Sbjct 105342 CGAAAGGCTATGCTGATAGCCAAACCGAAAAAGAATGT-TACGATGCCTTCCAATCCCTT 105284 Query 153510 GAATATGAAGTAAACACCTTACATACTGCAAATGGACAGACGCCTTTTGTCACGATCACT 153569 ||||| ||||| ||||| | ||||| || ||||| || || || || || || | Sbjct 105283 GAATACGAAGTGAACACACTGCATACCGCCAATGGTCAAACCCCCTTCGTAACCTTTGGG 105224 Query 153570 TTCGGTATGGGTACTGGTTGGCGCGA---ACGCATGATCCAGAAAGCAATTCTGAAAAAC 153626 || ||| | || || | || || |||| ||||||| || | ||||| |||||| Sbjct 105223 TTTGGTTTAGGCAC---ATCGCAAGAAGCACGCTTGATCCAACAATCCATTCTAAAAAAC 105167 Query 153627 CGTATTCGTGGACTGGGTAAAAAAGGCATTACTCCTGTATTCCCAAAACTGGTTATGTTT 153686 ||||| ||| | |||||||| | | ||| | || ||||| ||| | || | | Sbjct 105166 CGTATCGCTGGGTTAGGTAAAAATCGTAAAACTGCCGTTTTCCCTAAATTAGTGTTTGCT 105107 Query 153687 ATGGAAAAAGGGATTAA-CCTTAATCCGGAAGACAGAAACTATGATATTAAGAAATTGGC 153745 || ||||||| |||| | ||| || || ||||||||||| || | || || Sbjct 105106 ATTAAAAAAGGCCTTAATCACCAATATGG-TGATCCTAACTATGATATCAAACAGTTAGC 105048 Query 153746 CCTGGAATGTTCTTCAAAGCGTATGTATCCGGATATTATTAGCGCGGCTAATAACCGTCG 153805 | || ||| | || || |||||||| || || | | | | || | |||| Sbjct 105047 ATTAGAGTGTGCGAGCAAACGCATGTATCCCGACATCTTAAACTATGACAA-AGTTGTCG 104989 Query 153806 -TATTACTGGCTCTAGCATTCCTGTATCTCCTATGGGTTGTCGTAGTTTCCTTAGCGTGT 153864 | | || |||| | || | | | || ||||| || || || || ||||| |||| Sbjct 104988 ATGTAACGGGCT----CGTT--TAAAACGCCAATGGGCTGCCGCAGCTT-CTTAG-GTGT 104937 Query 153865 GGAATGATGAGCACGGTAATGAAATTCTTGATGGACGTAATAACCTGGGCGTTGTGACAA 153924 | || || | || | |||||| |||||| |||||||| | || || | | Sbjct 104936 -CTACGAAGAAAATGGCCAACAAATTCATGATGGCCGTAATAATTTAGGTGTCATTAGCC 104878 Query 153925 TCAACCTTCCTCGTATTGCGATTGAAGCCGAAGCACAGGAAGATGAAGACGCGCATGATG 153984 | ||||| || |||||||| |||||||| ||| ||| | ||||||||||| Sbjct 104877 TTAACCTGCCGCGTATTGCCATTGAAGC----GCA-AGGCA-ATGAAGACGCG------- 104831 Query 153985 CATTTTGGCGTATCCTTGATGAACGTCTGGAACTGTGCTTTGAAGCCCTGATGACTCGTA 154044 ||||||| || || ||||| || | | | ||||| ||||||| || | Sbjct 104830 --TTTTGGCAACGACTCGAAGAACGCCTAGCGATCGCCAAAAAAGCCTTGATGACACGCA 104773 Query 154045 TCGATAGCCTACGCGGTGTTAAAGCCAGTGTAGCCCCGATCCTTTATACAGAAGGTGCGT 154104 | | ||||| ||| ||||| | || || || ||||| |||| ||||| || | Sbjct 104772 TTGCACGCCTAGAAAATGTCAAAGCACGCGTTGCACCTATCCTATATATGGAAGGCGCCT 104713 Query 154105 TTGGTGTAAGGTTGAAACCCGATGAT 154130 || ||| | | ||| | |||||| Sbjct 104712 GCGGAGTACGACTCAAAGCAGATGAT 104687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 558055250386080