Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_014467.1 Length=176788 Score E Sequences producing significant alignments: (Bits) Value seq253 154 2e-32 seq87 91.5 2e-13 >seq253 Length=360942 Score = 154 bits (170), Expect = 2e-32 Identities = 798/1238 (64%), Gaps = 70/1238 (6%) Strand=Plus/Minus Query 154690 GCCCGTGCATACATCGAATATCGCCACGATCGCGATATTGCCCGTGAACAGAAAAGTA-- 154747 || |||||||| |||||||| ||||| || || |||| || || ||| ||| ||| Sbjct 105874 GCTCGTGCATATATCGAATACCGCCATGACCGAGATAATGAACGCGAA---AAACGTAGC 105818 Query 154748 -AGCTGTTCAAAGATATCTCCGGCATGGTGAATCTGTCCAA--CAAAGAG--ATCAC-CA 154801 | ||| | | ||||| ||| || | || ||| ||| | || || || Sbjct 105817 CAACTGACCCATGATATTCGCGGTCTGAT-----TGAACAAAGCAATGTTTCATTACTCA 105763 Query 154802 ACGAGAACGCAAACAAAGAC-GCACGGGTATTCCCTACACAGCGTGATTTGCTGGCGGGT 154860 | || || |||||||||||| ||| | || |||||| || ||||||||||| || || Sbjct 105762 ATGAAAATGCAAACAAAGACAGCAAAGTGAT-CCCTACCCAACGTGATTTGCTCGCAGGC 105704 Query 154861 ATTGTAGCGAAGCATTTCGCCCGTAATCATATCCTTCCGAAACATATCGTAGAAGCGCAT 154920 ||||| || ||||||| ||| | ||||| | || || | || || || Sbjct 105703 ATTGTCGCAAAGCATTACGCTAAACAACATATTTTGCCACGTGATGTGGTTATTGCTCAC 105644 Query 154921 GACTCCGGCGACATCCATTATCACGATCTGGACTATA-GCCCGTTCACCCCTTACACTAA 154979 || ||| || || |||||||||||||| || ||| ||| || |||| | ||| Sbjct 105643 GAACGCGGTGAAATTCATTATCACGATCTCGATTATGCGCCATTTTTCCCCATGTT-TAA 105585 Query 154980 CTGCTGTCTGGTTGACCTGAAAGGTATGCTTGAGAACGGTTTCAAGATGGGTAACGCGGA 155039 ||| ||| |||| || |||| ||| | || || || || |||||||| || || Sbjct 105584 CTGTATGCTGATTGATCTTGAAGGCATGTTAACTAATGGGTTTAAAATGGGTAATGCCGA 105525 Query 155040 CATTGAACCGCCTAAATCGATCGGTGTTGCTACCGCTCTCATGGCGCAGATCACCGCACA 155099 || || || |||||||| || ||| ||||| | | || || || | ||| || Sbjct 105524 AATAGAGCCTCCTAAATCAATTTCCACTGCCACCGCAGTGACAGCCCAAATTATCGCTCA 105465 Query 155100 GATTGCCTCTCACCAGTACGGCGGGACAACCTTTGCGAACG--TTGATAAAGTGCTGGCT 155157 | || || || || || || ||| | | | || ||||| || | || ||| Sbjct 105464 AGTAGCTAGCCATATTTATGGTGGCACCACCAT--CAACCGCATTGATGAAATCCTTGCT 105407 Query 155158 CCATACGTAGAAATGACATTCTTCAAACATCTGCGCGATGCTGAACA-TTATGGTATCGA 155216 || || || | || | | |||||||| || || || || || || || Sbjct 105406 CCTTATGTCCACATCAGCTATGAAAAACATCTAAAAACAGC-GATCAATTGGGGCATTGA 105348 Query 155217 ACACTATAACGATTATGTGTATGCAATCGAGAAGACCGAAAAAG-ATGTATTCGATGCGT 155275 | | || | |||| || || | || |||||||||| |||| | |||||| | Sbjct 105347 AGATGCGAAAGGCTATGC---TG--ATAGCCAA-ACCGAAAAAGAATGT-TACGATGCCT 105295 Query 155276 TCCAGTCCTATGAGTATGAAGTGAATACCCTGCATACTGCCAACGGGCAAACCCCGTTTG 155335 |||| ||| ||| || |||||||| || |||||||| ||||| || |||||||| || | Sbjct 105294 TCCAATCCCTTGAATACGAAGTGAACACACTGCATACCGCCAATGGTCAAACCCCCTTCG 105235 Query 155336 TTACCATCACTTTCGGTACTGGTACAAGCGACTATGAACGCATGATCCAGAAAGCGATTC 155395 | ||| | || ||| || ||| | | | |||| ||||||| || | |||| Sbjct 105234 TAACCTTTGGGTTTGGTTTAGGCACATCGCAAGAAGCACGCTTGATCCAACAATCCATTC 105175 Query 155396 TGAAAAATCGTATTCGC-GGCCTGGGTAAAGAGGGTATCACTCCGGTATTCCCTAAACTG 155454 | ||||| |||| |||| || | |||||| | ||| ||| | || ||||||||| | Sbjct 105174 TAAAAAACCGTA-TCGCTGGGTTAGGTAAAAATCGTAAAACTGCCGTTTTCCCTAAATTA 105116 Query 155455 GT-TATGTTCATGGAAAAAGG----AATCAACCTTGATCCAGAGGATCAGAACTATGACA 155509 || | || | || ||||||| |||| ||| || | |||| |||||||| | Sbjct 105115 GTGTTTGCT-ATTAAAAAAGGCCTTAATC-ACCAATAT---GGTGATCCTAACTATGATA 105061 Query 155510 TCAAACAACTTGCCCTTGAATGTGCTTCGAAACGCATGTACCCAGATATCATTAGTTCAG 155569 ||||||| | || | || ||||| ||||||||||| || || ||| | | | | Sbjct 105060 TCAAACAGTTAGCATTAGAGTGTGCGAGCAAACGCATGTATCCCGACATCTTAAACTATG 105001 Query 155570 CTAATAACCGCGCTATTACTGGTTCTAGCGTTCCTGTATCTCCTATGGGTTGTCGCAGTT 155629 || || | | || || | |||| | | | || ||||| || ||||| | Sbjct 105000 ACAAAGTTGTCGATGTAACGGGCT----CGTT--TAAAACGCCAATGGGCTGCCGCAGCT 104947 Query 155630 TCCTTAGCGTGTGGCATGATGATAACGGTAATGAAATTCTGGATGGACGTAATAATCTGG 155689 | ||||| |||| | || || || || | |||||| ||||| ||||||||| | | Sbjct 104946 T-CTTAG-GTGT-CTACGAAGAAAATGGCCAACAAATTCATGATGGCCGTAATAATTTAG 104890 Query 155690 GTGTGGTGACAATCAACCTCCCACGTATTGCGATCGAAGCCGAAGCACAGGAAGAAGAAG 155749 |||| | | | ||||| || |||||||| || ||||| ||| ||| | | |||| Sbjct 104889 GTGTCATTAGCCTTAACCTGCCGCGTATTGCCATTGAAGC----GCA-AGGCA-ATGAAG 104836 Query 155750 ACGCACACGATGCATTTTGGCGTATCCTTGATGAACGTCTGGATCTTTGTTACGATGCTC 155809 || || ||||||| || || ||||| || | | | | || Sbjct 104835 AC---------GCGTTTTGGCAACGACTCGAAGAACGCCTAGCGATCGCCAAAAAAGCCT 104785 Query 155810 TGATGACTCGTATCGAAAGCCTACGCGGTGTTAAAGCCAGTGTAGCCCCGATCCTGTACA 155869 ||||||| || || | | ||||| ||| ||||| | || || || ||||| || | Sbjct 104784 TGATGACACGCATTGCACGCCTAGAAAATGTCAAAGCACGCGTTGCACCTATCCTATATA 104725 Query 155870 CAGAAGGTGCGTTTGGTGTACGCCTGAAACCGGATGAT 155907 ||||| || | || ||||| || ||| | |||||| Sbjct 104724 TGGAAGGCGCCTGCGGAGTACGACTCAAAGCAGATGAT 104687 >seq87 Length=489008 Score = 91.5 bits (100), Expect = 2e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 49781 GGCCCTTTAGCTTAATTGGTTAGAGCGGGTGACTCATAATCGCGCGGTTGCTGGTTCGAA 49840 ||||| |||||| | ||||||||||| | |||||||||||| ||| |||||||| | Sbjct 311483 GGCCCCTTAGCTCAGTTGGTTAGAGCAGTCGACTCATAATCGATTGGTCGCTGGTTCAAG 311542 Query 49841 TCCAGCAGGGGCCACCAAAt 49860 |||||||||||||||||||| Sbjct 311543 TCCAGCAGGGGCCACCAAAT 311562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565581489227040