Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_014636.1 Length=225268 Score E Sequences producing significant alignments: (Bits) Value seq253 378 1e-99 >seq253 Length=360942 Score = 378 bits (418), Expect = 1e-99 Identities = 1257/1922 (65%), Gaps = 79/1922 (4%) Strand=Plus/Plus Query 123221 ATGTTTGACACGACGCTGGACTTCGTCCTGTTTGCCGACGTTAAATGCGCGAGATCCAGG 123280 |||||| | || || | |||||| || ||||| || ||||||||| |||| | || Sbjct 103991 ATGTTTAATGCGTCGTTTGACTTCTTCTTGTTTACCCGCGTTAAATGGTCGAGCATCTGG 104050 Query 123281 GTTACCCAAATACCCACAGACGCGACGAATAACGTTCATCTTACGGTCA---TCGTGATT 123337 | |||| | ||| ||||| || | ||| || ||| | ||||| || || || Sbjct 104051 GCTACCTAGATAACCACACACTCTACGGATCACGGAGAC---ACGGTTGGTGTCATGGTT 104107 Query 123338 GCCACACTTCGGACATTCGTATCCTTTAGAAGTAGCGGTAAACTCACCGTTAAATCCACA 123397 ||||| || || | | |||||| ||| | |||| |||||| |||||||||| Sbjct 104108 ACCACAACGTGGGCACACAAAACCTTTACTGGTACAGTTAAATTCACCGGTAAATCCACA 104167 Query 123398 TTCAAAACAAACATCAACTGGAGTGTTTGTTCCATAGTACGGAGTGTTCCGATAAGCATA 123457 |||| |||| |||||| || ||||| |||||||| || || | | ||| || Sbjct 104168 TTCATAACATTCATCAATAGGCGTGTTGGTTCCATAATAAGGTACATGCTCATAGCTGTA 104227 Query 123458 ATCCCAAACTGCTTCGAGTGCTTCCAGATTGTGTTTCATATTCGGATATTCACCGTATGA 123517 |||||||| |||| ||||||| || ||||| | | || ||||| || ||||| | Sbjct 104228 GTCCCAAACGTCTTCAAGTGCTTTCAAGTTGTGCTGTAAGTTTGGATACTCGCCGTAGCA 104287 Query 123518 AATGAAACCACCGGTACTAAGCGGAATGAATTGCTTTTCAAAATCGATCTTGTCATACGG 123577 ||| ||||| || | || | | | || ||| ||||||||| ||||| || || || Sbjct 104288 AATAAAACCGCCATTTGCGAGAGCAGGGTATGGCTGTTCAAAATCAATCTTATCGTATGG 104347 Query 123578 ATTT--GTGTTCATATCCACAGACAGATGGAAGCTGTTTGTGTAATAGTCTTTATCA--A 123633 || | ||| | || ||| || ||||| || || ||||| || |||| || | Sbjct 104348 GTTAACGCGTT--TTTCAACATCAAGGTGGAAACTATTGGTGTAGTAACCTTTTTCCGTA 104405 Query 123634 ACACCTTGTG----CTCATACAGAGCGTGATCGATCTTAGCGAAACGATAACACAGACTT 123689 ||||||| | || || ||| ||| | | |||||||| ||||| || Sbjct 104406 ACACCTTCGATAACCCCAAACTCAGCAGTATCAAGGCGACAGAAACGATCACACAAGTTT 104465 Query 123690 TCAGATGGAGTGCCATACAGACTAAACGCCAGTCCAGTTTCTGCTTTCCACGCATTAGCC 123749 ||| ||| |||| ||| || ||||| | || |||||||||||||| ||| | | Sbjct 104466 TCACTTGGGGTGCTATAAAGGCTAAAACCATAGCCTGTTTCTGCTTTCCATTCATCGGTC 104525 Query 123750 ATTTCTTTCATGCGAGACAATACGTCCAGCAAGAATGCTTGTTTCTCG-------GCGTT 123802 || | |||| || | || || || |||| |||||| | ||| Sbjct 104526 GCTTGGCGTAGGCGATCCACAA--TC--GC--GATGGCTT-TTTCTCTTAATAATGGGTT 104578 Query 123803 TTCCATAACGTGCGATTCATCGTTGAACTTGATGAT-CTCAGATACT-TCATGCAATCCA 123860 || || ||| || || || || | | ||| | ||||| || ||| Sbjct 104579 GTCGTACACATGCTGTTG-----TGTACCAAATAGTGCATTGATTGTCTCATGTAAGCCA 104633 Query 123861 ATATAGCC-AATGCTAACAGATGCGCGACCATTTTCAAATGCTTTCATGATGTCATCATT 123919 |||||||| |||| | | ||||||||||| |||| ||| | | | ||||| Sbjct 104634 ATATAGCCTAATGAT-ATGGATGCGCGACCGTTTTTAAAGATCTCCGCCACACTATCATC 104692 Query 123920 TGGTTTCAGACGAACACCACAAGCACCTTCAACATAAAGAATCGGAGCAACGCTTGCCTT 123979 || ||| || || || || || || ||||| | ||| || || || ||||||| ||| || Sbjct 104693 TGCTTTGAGTCGTACTCCGCAGGCGCCTTCCATATATAGGATAGGTGCAACGCGTGCTTT 104752 Query 123980 GACACCACGCAGACGATCAACGCGAGTCAACAAAGCTTTCTTAACGATTTCCATACGCTC 124039 |||| || || ||| ||| |||| ||| ||||| || |||| | | || || Sbjct 104753 GACATTTTCTAGGCGTGCAATGCGTGTCATCAAGGCTTTTTTGGCGATCGCTAGGCGTTC 104812 Query 124040 TTCCAG-AATTTCAAAGAAGCGCATTTGATTGCCGTTTGCGTCGAGTGCGATACGCGGCA 124098 ||| || || | || | ||| || |||||| | || || | || |||||||||| Sbjct 104813 TTCGAGTCGTTGCCAAAACGCG-TCTTCATTGCCTTGCGCTTCAATGGCAATACGCGGCA 104871 Query 124099 AGTTCAGAGTAACAACACCGAGATTGTTTCTGCCTTCATGAACTTCATTACCGGTTTCGT 124158 ||| || ||| ||||| | ||| || | ||| ||||||| || | || || | Sbjct 104872 GGTTAAGGCTAATGACACCTAAATTATTACGGCCATCATGAATTTGTTGGCCATTT---T 104928 Query 124159 CTTCCCAGCGATGCAAGAAACTACGGCATCCCATAGGGAACTTAAAGCTACCAGTCACTT 124218 |||| || | ||||| || ||||| ||||| || ||||| || || || | Sbjct 104929 CTTCGTAGACACCTAAGAAGCTGCGGCAGCCCATTGGCGTTTTAAACGAGCCCGTTACAT 104988 Query 124219 CTACCACTTTATCATAACTCAAGATGTCTGGATACATACGCTTGGCAGCGCACTCCAGTG 124278 | || ||||| ||||| | |||||||| |||||||| || ||| || ||||| | || Sbjct 104989 CGACAACTTTGTCATAGTTTAAGATGTCGGGATACATGCGTTTGCTCGCACACTCTAATG 105048 Query 124279 CCATCTGTTTGATACGATACAGAGGATCA----GTTGGTTTCAAGTTGTGTCCGTCTTTC 124334 | | |||||||||| ||| ||||||| ||||| || | || | ||| Sbjct 105049 CTAACTGTTTGATATCATAGTTAGGATCACCATATTGGT----GATTAAGGCCTTTTTTA 105104 Query 124335 AGCGCGAAAACAAGTTTCGGGAAAACGGGAGTAATACCTTCTTTGCCAAGACCTTTCATC 124394 | || || || | ||| |||||||||| ||| ||| | ||| || | || || Sbjct 105105 ATAGCAAACACTAATTTAGGGAAAACGGCAGTTTTACGATTTTTACCTAACCCAGCGATA 105164 Query 124395 CGAACTTTCAGAATTGCTTCCTGAATGAGTTCGGATTCCCAGCTA-GTGCCTAGTCCAAA 124453 || ||| ||||| | || || || | || | | || | ||||||| ||||| Sbjct 105165 CGGTTTTTTAGAATGGATTGTTGGATCA-AGCGTGCTTCTTGCGATGTGCCTAAACCAAA 105223 Query 124454 CCCGAAAGTGCAGAATGGAGTTTGACCATTTGCCGAGTGCAGAGTGTTTACCTCATACTC 124513 ||| || || ||| || ||||||||||| || | ||||| ||||| || || || || Sbjct 105224 CCCAAAGGTTACGAAGGGGGTTTGACCATTGGCGGTATGCAGTGTGTTCACTTCGTATTC 105283 Query 124514 TAGGCTTTGCATTGCATCAT-ACACGGCTTTGCGAGTCTTTTCAAT-AGCGTATTGCCTT 124571 ||| ||| | ||||| | ||| ||| || || || | || ||| || ||||| Sbjct 105284 AAGGGATTGGAAGGCATCGTAACATTCTTTTTCG-GT-TTGGCTATCAGC--ATAGCCTT 105339 Query 124572 T--GATCTGGAATTTTCCAATAACGCGCTTCATCCAAATGCTTTTCATGTGTCATCTTAA 124629 | |||| ||| ||||| |||| | | ||| ||||||| | || | | Sbjct 105340 TCGCATCTTCAATGCCCCAATTGATCGCTGTTTTTAGATGTTTTTCATAGCTGATGTGGA 105399 Query 124630 CATAAGGTGCCAATGCTTCGTCAATGCGATTAATTGTGTTGCCACCATAAATGTGACTTG 124689 ||||||| || | ||| |||||||| || || ||| ||||||||||||| || || | Sbjct 105400 CATAAGGAGCAAGGATTTCATCAATGCGGTTGATGGTGGTGCCACCATAAATATGGCTAG 105459 Query 124690 CAACCTGTGCAATGATTTGAGCAGTAACAGCCGCAGCGGTAGCGATGCTCTTAGGAGTTT 124749 | || || || || ||||| || || || || | || || | || ||||||| | Sbjct 105460 CTACTTGAGCGATAATTTGGGCTGTCACTGCGGTGGCAGTGGAAATTGATTTAGGAGGCT 105519 Query 124750 CGATCTGTGCATTACCCATGCGGAACCCACGCTCTAACATGCCGTTGAGATCAATCAACA 124809 | || | ||||||||||| |||||| ||||||||| | |||||||||| || Sbjct 105520 CTATTTCGGCATTACCCATTTTAAACCCATTAGTTAACATGCCTTCAAGATCAATCAGCA 105579 Query 124810 TGCAGTTAAACATTGGGAAGAACGGAGAGTAATCAAGATCATGGAAGTGAATAAAACCAG 124869 | ||||||||||| ||||| || || | ||||| ||||| || | ||||| ||| Sbjct 105580 TACAGTTAAACATGGGGAAAAATGGCGCATAATCGAGATCGTGATAATGAATTTCACCGC 105639 Query 124870 CTTCGTGTGCTTGCAGAACTTCGGTCGGC---AGATAGTGCTTTGCAAAGTGCTTGCTTA 124926 |||||| || | || || ||| | || || || || | ||||| | Sbjct 105640 GTTCGTGAGCAATAACCACATCACGTGGCAAAATATGTTGTTTAGCGTAATGCTTTGCGA 105699 Query 124927 CTATGCCCGCGACTAAATCGCGTTGTGTCGGAATAACTTTTGCATCTTTGTTTGCATTCT 124986 | ||||| |||| ||||| ||||| || || || ||||| |||||||||||||| | Sbjct 105700 CAATGCCTGCGAGCAAATCACGTTGGGTAGGGATCACTTTGCTGTCTTTGTTTGCATTTT 105759 Query 124987 CAT----TCATGATCCCTTCGTCTTCTTGCTTCATCAGTCCGACGATTCGC-TTGGTCAT 125041 ||| | |||| | || | ||| | ||||| ||| ||| | | | ||||| Sbjct 105760 CATTGAGTAATGAAACATTGCT----TTGTTCAATCAGACCG-CGAATATCATGGGTCAG 105814 Query 125042 ATCGCT--GTTCATATCGCGAGCAACGTCACGATCATAGCGGTATTCGATGTAGGCGCGA 125099 | ||| ||| | ||||| || || || |||| |||||||||||| || || ||| Sbjct 105815 TTGGCTACGTT--TTTCGCGTTCATTATCTCGGTCATGGCGGTATTCGATATATGCACGA 105872 Query 125100 GC 125101 || Sbjct 105873 GC 105874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 720714167377440