Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1531 87.8 2e-12 seq253 87.8 2e-12 seq1368 82.4 9e-11 >seq1531 Length=926236 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 176890 GGCATCACGAACATTCTTAC-ACTTCCCACGAAGAGGGAAGACACCGTAGTGATCGCGAC 176948 ||| ||||||||||| | || | || ||||| | || |||||||| ||| | ||| | Sbjct 336405 GGCTTCACGAACATT-TAACAATTTACCACGCAACGGAAAGACACCATAGAAGTTGCGTC 336347 Query 176949 CAACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCCTCTGTCACGATGA 177008 | | ||| ||||||| ||| || | | ||| || || |||||||| || | || | Sbjct 336346 CTATAACACCAAGACCCGAAACAGCTAAAGATTTAGCTGAGTCACCCTCGGTTAAAATCA 336287 Query 177009 GTGTACACTTGCCAGATTGTGCCGTACCCGCCTTGTTCGCATCATCCAATTTGGGAATAC 177068 |||||| || ||| | | ||||| || | ||| ||||| |||| |||||| |||| Sbjct 336286 AAGTACACATGTAAGAATTTTTGGTACCGGCTTCGTTAGCATCTTCCAGTTTGGGTATAC 336227 Query 177069 CAGTAATTTTGG 177080 | | ||||||| Sbjct 336226 CCTTGATTTTGG 336215 >seq253 Length=360942 Score = 87.8 bits (96), Expect = 2e-12 Identities = 247/371 (67%), Gaps = 10/371 (3%) Strand=Plus/Minus Query 15884 ACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGC 15943 ||| || || |||||||| || | | || ||||| | ||| | || || || || Sbjct 67712 ACGGTCGAAACGACCTGGACGTAATAATGCAGGGTCAAGAACATCTGCACGGTTAGTCGC 67653 Query 15944 GGCGATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTT 16003 || ||||| | ||||||| | | |||||||||||||| || ||| | ||||| Sbjct 67652 TGCAATGACGATAATACCTTCATTGCCTTCAAAACCATCCATTTCAACCAACATTTGGTT 67593 Query 16004 AATAGTTTGTTCCCGTTCATCAT--TCGCTGGCATACCACCAGCACTGCGTTGCTTTCCC 16061 | ||||| || |||||||| | ||| || || ||| || | ||||| || Sbjct 67592 CAATGTTTGCTCGCGTTCATCGTGACCGC-CGCCTA-AACCTGCGCCACGTTGACGACCG 67535 Query 16062 ACGGCATCAATCTCATCAATGAAGACGATGCATG--GTTGATTTTCGCGAGCGACTTCAA 16119 || |||||||||||||| || |||| ||||| | | || |||| | || ||| | Sbjct 67534 ACCGCATCAATCTCATCGATAAAGATAATGCAAGGCGCTGCTTTTTTC--GCTTGTTCGA 67477 Query 16120 AGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 16179 | | ||| || ||||| || || ||||| |||||||| || || |||| | | | Sbjct 67476 ACATATCACGAACACGAGATGCACCAACACCGACAAACATTTCAACGAAGTCAGAACCTG 67417 Query 16180 AACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTA 16238 || || | | || || || || | |||||| || || ||| || || | || ||| Sbjct 67416 AA-ATAGTAAAAAATGGTACTTTTGCTTCACCAGCGATCGCTTTAGCAAGCAATGTTTTA 67358 Query 16239 CCCGTACCTGG 16249 || ||||| || Sbjct 67357 CCTGTACCCGG 67347 >seq1368 Length=130540 Score = 82.4 bits (90), Expect = 9e-11 Identities = 169/246 (69%), Gaps = 8/246 (3%) Strand=Plus/Plus Query 13744 TGTTTGCATGCTCCGGAATCCTCTTCAACCATGAATCACCGAGACGAGGTGCAGACTTTG 13803 |||| || ||| || || ||||| || || ||||||||| || |||||| | | |||| Sbjct 18318 TGTTCGCCTGCAATGGTATACTCTTTAATCACGAATCACCGCGAAGAGGTGAAAATTTTG 18377 Query 13804 TGACCATGAAGATTACC-GAGG-GTATCAAACAA--ATCATGAAGGGTGAAAAGGAGTTC 13859 | || || |||||| || ||| |||| | ||| | || | || ||| | | Sbjct 18378 TAACACGTAAAATTACCCGATCAGTAGCAAAAATCTATC-TCAA---TCAATTGGAATAC 18433 Query 13860 ATTGAATTGGGTAACATAAACGCGGAGAGAGATTGGGGTCACGCGAAGGACTATGTTGAA 13919 ||||||||||||| || | | | | ||||||||||| || | ||| ||||| || Sbjct 18434 TTTGAATTGGGTAATTTAGATTCAAAACGTGATTGGGGTCATGCTATGGATTATGTAGAG 18493 Query 13920 GCTATGTGGCTCATGCTTCAACAAGAGGAAGCCGACGAATATGTAGTAGCAACGGGTGAG 13979 || |||||| | ||| | ||||| ||| || || || ||||| | || || || || Sbjct 18494 GCCATGTGGATGATGTTGCAACAGGAGAAACCCTCAGATTATGTCATTGCCACCGGAGAA 18553 Query 13980 ACCCAT 13985 || ||| Sbjct 18554 ACGCAT 18559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620729108353360